Job Description P37443 Confidence 99.13% Date Thu Jan 5 11:55:38 GMT 2012 Rank 35 Aligned Residues 190 % Identity 17% Template c3af5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii Resolution 2.60 Å

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		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.					540	.	.	.	.	.	.	.		.	.	550		.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.		.	.	.	.	.	.	580	.
Predicted Secondary structure																																	.	.	.	.									.				.																								.
Query SS confidence																																	.	.	.	.									.				.																								.
Query Sequence		G	L	A	M	V	I	A	R	N	G	K	A	I	L	Y	D	T	G	L	A	W	P	E	G	D	S	G	Q	Q	L	I	.	.	.	.	I	P	W	L	H	W	H	N	.	L	E	P	.	E	G	V	I	L	S	H	E	H	L	D	H	R	G	G	L	D	S	I	L	H	I	W	.	P	M	L	W	I	R	S	P
Query Conservation																																	.	.	.	.									.				.																								.
Alig confidence																																	.	.	.	.									.				.																								.
Template Conservation
Template Sequence		R	S	A	L	L	V	Q	T	D	E	S	F	V	L	V	D	F	G	V	N	V	A	M	L	N	D	P	Y	K	A	F	P	H	F	D	A	P	E	F	Q	Y	V	L	R	E	G	L	L	D	A	I	I	I	T	H	A	H	L	D	H	C	G	M	L	P	Y	L	F	R	Y	N	L	F	D	G	P	I	Y	T	T
Template Known Secondary structure										S	S											G	G	G	T	T						S			T	T										T	T								S		S	S					T	T							T	T				S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		582	.	.																																		.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		L	N	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	H	Q	P	C	V	R	G	E	A	W	Q	W	Q	.	G	L	R	F	S	A	H	W	P	L	Q	G	S	N	D	K	G	N	N	H	S	C	V	V	K	V	D	D
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.								.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence		P	P	T	R	D	L	M	V	L	L	Q	K	D	F	I	E	I	Q	Q	S	N	G	Q	D	P	L	Y	R	P	R	D	I	K	E	V	I	K	H	T	I	T	L	D	Y	G	E	V	R	D	I	S	P	D	I	R	L	T	L	H	.	.	.	.	N	A	G	H	I	L	G	S	A	I	V	H	L	H	I	G	N
Template Known Secondary structure																						T	T				S	S											T						T	T							T	T							.	.	.	.			S	S	S	T	T									T	T
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340					.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.									.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.						680	.	.	.	.	.	.	.	.	.	690	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.																			.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.																			.	.	.	.	.
Query Sequence		G	T	N	S	I	L	L	T	G	D	I	E	A	P	A	E	Q	K	M	L	S	R	Y	W	Q	Q	V	Q	A	T	L	L	Q	V	.	.	.	.	.	.	.	.	P	H	H	G	S	N	T	S	S	S	L	P	L	I	Q	R	V	N	.	.	.	.	.	G	K	V	A	L	A	S	A	S	R	Y	N	A	W	R
Query Conservation																																				.	.	.	.	.	.	.	.																			.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.																			.	.	.	.	.														.	.
Template Conservation																																																																																.	.
Template Sequence		G	L	H	N	I	A	I	T	G	D	F	K	F	I	P	T	R	L	L	E	P	A	N	A	K	F	P	R	L	E	T	L	V	M	E	S	T	Y	G	G	A	N	D	I	Q	M	P	R	E	E	A	E	K	R	L	I	E	V	I	H	N	T	I	K	R	G	G	K	V	L	I	P	A	M	A	V	G	R	.	.
Template Known Secondary structure		T	T	T							S				S			S	S							B		S	S		S							T	T		S	T	T																							T	T									T	T	T		.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		695	.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	S	N	K	V	K	H	R	Y	Q	L
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	A	Q	E	V	M	M	V	L	E	E
Template Known Secondary structure		.	.
Template Predicted Secondary structure		.	.
Template SS confidence
				436	.	.	.	440	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions