Job Description P37443 Confidence 99.20% Date Thu Jan 5 11:55:38 GMT 2012 Rank 28 Aligned Residues 210 % Identity 18% Template c2ycbA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor; PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus Resolution 3.10 Å

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		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.				.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.			.	.	.	.	.	550		.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																																						.	.							.
Query SS confidence																	.	.	.																																						.	.							.
Query Sequence		K	P	R	P	D	E	W	Q	L	Y	M	L	D	V	G	.	.	.	Q	G	L	A	M	V	I	A	R	N	G	K	A	I	L	Y	D	T	G	L	A	W	P	E	G	D	S	G	Q	Q	L	I	I	P	W	L	H	.	.	W	H	N	L	E	P	.	E	G	V	I	L	S	H	E	H	L	D	H	R	G	G	L
Query Conservation																	.	.	.																																						.	.							.
Alig confidence																	.	.	.																														.	.							.	.							.
Template Conservation																																																	.	.
Template Sequence		K	Y	D	N	D	W	A	R	L	T	A	M	G	G	F	R	E	V	G	R	S	C	L	Y	L	Q	T	P	N	S	R	V	L	L	D	C	G	V	N	V	A	G	G	D	D	K	N	.	.	S	Y	P	Y	L	N	V	P	E	F	T	L	D	S	L	D	A	V	I	I	T	H	A	H	L	D	H	S	G	F	L
Template Known Secondary structure		S	S												S	S	S	S	S	S									S	S												S	S						.	.		S			T	T	S	T	T			T	T	T							S	S	S	S					T	T
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.																																		.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		D	S	I	L	H	I	W	P	M	L	W	I	R	S	P	L	N	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	H	Q	P	C	V	R	G	E	A	W	Q	W	Q	.	G	L	R	F	S	A	H	W	P	L	Q	G	S
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.								.	.	.	.
Template Conservation																																																																												.	.	.	.
Template Sequence		P	Y	L	Y	H	Y	G	Y	D	G	P	V	Y	C	T	A	P	T	R	D	L	M	T	L	L	Q	L	D	H	I	D	I	A	H	R	E	D	E	P	L	P	F	N	V	K	H	V	K	K	S	V	K	H	T	I	T	L	D	Y	G	E	V	T	D	I	A	P	D	I	R	L	T	L	H	.	.	.	.	N	A
Template Known Secondary structure							T	T			S																											T				S												T						T	T							T	T							.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.					.	.
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.								.	.		.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.			.																	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.			.																	.	.	.	.	.
Query Sequence		N	D	K	G	N	N	H	S	C	V	V	K	V	D	D	G	T	N	S	I	L	L	T	G	D	I	E	A	P	A	E	Q	K	M	L	S	R	Y	W	Q	Q	V	Q	A	T	L	L	Q	V	.	.	.	.	.	.	.	P	H	.	H	G	S	N	T	S	S	S	L	P	L	I	Q	R	V	N	.	.	.	.	.
Query Conservation																																																			.	.	.	.	.	.	.			.																	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.			.																	.	.	.	.	.
Template Conservation
Template Sequence		G	H	I	L	G	S	A	M	A	H	L	H	I	G	D	G	Q	H	N	M	V	Y	T	G	D	F	K	Y	E	Q	S	R	L	L	E	A	A	A	N	R	F	P	R	I	E	T	L	V	M	E	S	T	Y	G	G	H	E	D	V	Q	P	S	R	N	R	A	E	K	E	L	V	K	T	I	Y	S	T	L	R	R
Template Known Secondary structure			S	S	T	T									T	T	T	T	T							S			S	S			S	S	S								S			S							T	T		S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.								.	.	710	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.
Query Sequence		G	K	V	A	L	A	S	A	S	R	Y	N	A	W	R	L	P	S	N	K	V	K	H	R	Y	Q	L	Q	.	.	.	.	.	.	.	G	Y	Q	W	I
Query Conservation																														.	.	.	.	.	.	.
Alig confidence															.	.	.	.												.	.	.	.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		G	G	K	I	L	I	P	V	F	A	V	G	R	.	.	.	.	A	Q	E	L	M	I	V	L	E	E	Y	I	R	T	G	I	I	D	E	V	P	V	Y
Template Known Secondary structure		T									T	T	T		.	.	.	.														T	T	S	S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420					.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions