Job Description P37443 Confidence 99.10% Date Thu Jan 5 11:55:38 GMT 2012 Rank 39 Aligned Residues 204 % Identity 16% Template c2xr1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Resolution 2.59 Å

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		495	.	.	.	.	500	.	.	.	.	.	.	.				.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure															.	.	.																							.
Query SS confidence															.	.	.																							.
Query Sequence		R	P	D	E	W	Q	L	Y	M	L	D	V	G	.	.	.	Q	G	L	A	M	V	I	A	R	N	G	K	A	I	L	Y	D	T	G	L	A	W	.	P	E	G	D	S	G	Q	Q	L	I	I	P	W	L	H	W	H	N	L	E	P	E	G	V	I	L	S	H	E	H	L	D	H	R	G	G	L	D	S	I	L
Query Conservation															.	.	.																							.
Alig confidence															.	.	.																							.																	.
Template Conservation																																																									.
Template Sequence		K	D	Q	W	V	R	V	T	A	L	G	G	C	K	E	V	G	R	S	C	F	L	L	S	T	P	E	S	R	I	L	I	D	C	G	V	N	V	G	S	D	E	N	M	T	P	Y	L	Y	V	P	E	V	F	P	.	L	N	Q	I	D	A	V	I	V	T	H	A	H	L	D	H	Q	G	L	V	P	L	L	F
Template Known Secondary structure		S												S	S	S	S	S									S	S												S	S		S	S					T	T	S	T	T	T		S	.	G	G	G								S	S						T	T
Template Predicted Secondary structure																																																									.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		571	.	.	.	.	.	.	.	.	580	.	.	.	.																																		.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		H	I	W	P	M	L	W	I	R	S	P	L	N	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	H	Q	P	C	V	R	G	E	A	W	Q	W	Q	.	G	L	R	F	S	A	H	W	P	L	Q	G	S	N	D	K	G
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.								.	.	.	.
Template Conservation																																																																								.	.	.	.
Template Sequence		K	Y	G	Y	E	G	P	V	Y	C	T	P	P	T	R	D	L	M	V	L	L	Q	L	D	Y	I	D	V	A	A	K	E	G	K	K	I	P	Y	E	S	G	M	V	A	K	T	L	K	H	T	I	P	L	D	Y	E	E	V	T	D	I	A	P	D	I	K	L	T	F	H	.	.	.	.	N	A	G	H	I	L
Template Known Secondary structure			T	T			S																											T					S		T									T						T	T							T	T							.	.	.	.			S	S	S	T
Template Predicted Secondary structure																																																																								.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.					.	.	.	.	330	.
		617	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.									.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.						680	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.																			.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.																			.	.	.	.	.
Query Sequence		N	N	H	S	C	V	V	K	V	D	D	G	T	N	S	I	L	L	T	G	D	I	E	A	P	A	E	Q	K	M	L	S	R	Y	W	Q	Q	V	Q	A	T	L	L	Q	V	.	.	.	.	.	.	.	.	P	H	H	G	S	N	T	S	S	S	L	P	L	I	Q	R	V	N	.	.	.	.	.	G	K	V	A
Query Conservation																																															.	.	.	.	.	.	.	.																			.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation
Template Sequence		G	S	A	I	S	H	F	H	I	G	D	G	L	H	N	V	V	F	T	G	D	Y	K	Y	E	K	T	R	L	F	D	P	A	V	N	K	F	P	R	V	E	T	V	I	S	E	A	T	Y	G	N	A	N	A	F	Q	P	A	L	K	D	A	E	K	H	L	Q	M	V	V	K	N	T	I	E	R	G	G	I	A
Template Known Secondary structure		T									T	T	T	T								S				S			S	S							B		S			S							T	T		S	T	T																							T	T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		684	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	S	A	S	R	Y	N	A	W	R	L	P	S	N	K	V	K	H	R	Y	Q	L	Q
Query Conservation
Alig confidence											.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		V	I	P	A	F	A	V	G	R	.	.	.	.	S	Q	E	V	M	I	V	L	E	E	S
Template Known Secondary structure							T	T	T		.	.	.	.
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		412	.	.	.	.	.	.	.	420					.	.	.	.	.	.	.	.	.	430	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions