Job Description P37443 Confidence 36.61% Date Thu Jan 5 11:55:38 GMT 2012 Rank 154 Aligned Residues 73 % Identity 19% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		517	.	.	520	.	.	.	.	.	.	.	.	.	530																													.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Query Sequence		N	G	K	A	I	L	Y	D	T	G	L	A	W	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	D	S	G	Q	Q	L	I	I	P	W	L	H	W	H	N	L	E	P	E	G	V	I	L	S	H	E	H	L	D	H	R	G	G	L	.	.
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.																	.	.
Template Conservation																																																														.	.
Template Sequence		N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	A	C	E	A	Q	A	K	A	F	K	D	K	V	D	V	.	.	A	S	V	I	V	T	K	L	D	G	H	A	K	G	G	G	A	L
Template Known Secondary structure		T													T	T																		S								T	T			T	T															.	.								T	T	S					T
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
			567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	S	I	L	H	I	W	P	M	L	W	I	R	S	P	L	N	W	E	H	H	Q	P	C	V
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		S	A	V	A	A	T	K	S	P	I	I	F	I	G	T	G	E	H	I	D	D	F	E	P	F	K
Template Known Secondary structure																	S	S	S	T	T						T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions