Job Description Q47689 Confidence 78.99% Date Thu Jan 5 12:37:03 GMT 2012 Rank 8 Aligned Residues 300 % Identity 10% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.									.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.
Query Sequence		L	G	P	A	T	G	Y	T	V	A	W	L	Y	W	L	T	W	T	V	A	L	G	S	S	F	T	A	A	G	F	C	M	Q	Y	W	F	P	Q	V	P	V	W	V	W	C	V	V	F	C	A	I	I	F	G	L	N	V	I	.	.	.	.	.	.	.	.	S	T	R	F	F	A	E	G	E	F	W	F	S	L
Query Conservation																																																												.	.	.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F
Template Known Secondary structure																																		T	T	S	T	T				T																				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	V	V	T	I	I	A	F	I	I	L	G	G	A	A	I	F	G	F	I	P	M	Q	D	G	S	P	A	P	G	L	S	N	I	T	A	E	G	W	F	P	H	G	G	L	P	I	L	M	T	M	V	A	V	N	F	A	F	S	G	T	E	L	I	G	I	A	A	G	E	T	E	N	P	R	K	V	I	P
Query Conservation
Alig confidence																																																																											.	.
Template Conservation																																																																											.	.
Template Sequence		L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	.	.	G	R	T	V	R
Template Known Secondary structure																																				T					S	S								T											T											T		S	.	.	S
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.										.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.
Query Sequence		V	A	I	R	T	T	I	A	R	L	I	I	F	F	I	G	T	V	F	V	L	A	A	.	.	.	.	.	.	.	.	.	L	I	P	M	Q	Q	V	G	V	E	K	S	P	F	V	L	V	F	E	K	V	G	I	P	Y	A	A	D	I	F	N	F	V	I	L	T	A	I	L	S	A	A	N	S	G	L	Y	A
Query Conservation																									.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A
Template Known Secondary structure																																T	T	S								G	G	G												T	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	R	M	L	W	S	L	S	N	E	R	T	L	P	A	C	F	A	R	V	T	K	N	G	V	P	L	T	A	L	S	V	S	M	L	G	G	V	L	A	L	F	S	S	V	V	A	P	D	T	V	F	V	A	L	S	A	I	S	G	F	A	V	V	A	V	W	L	S	I	C	A	S	H	F	V	F	R	R
Query Conservation
Alig confidence														.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.
Template Sequence		C	S	Y	T	L	A	M	S	T	C	R	E	.	.	.	.	.	.	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K
Template Known Secondary structure									T	T	S		S	.	.	.	.	.	.	S	S	S	S		S	S		S	T	T																				S	S
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.							.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
		390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	L	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	N	W	K	D
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		500	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions