Job Description Q47689 Confidence 100.00% Date Thu Jan 5 12:37:03 GMT 2012 Rank 1 Aligned Residues 424 % Identity 16% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		K	R	T	M	K	T	R	H	L	I	M	L	S	L	G	G	V	I	G	T	G	L	F	F	N	T	G	Y	I	I	S	T	T	G	A	A	G	T	L	L	A	Y	L	I	G	A	L	V	V	W	L	V	M	Q	C	L	G	E	L	S	V	A	M	P	E	T	G	A	F	H	V	Y	A	A	R	Y	L	G	P	.
Query Conservation																																																																																	.
Alig confidence																																							.																																										.
Template Conservation																																							.
Template Sequence		N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	.	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D	N
Template Known Secondary structure					B																		T	T	T	S									G	G	G		.																							T	T				T	T	T											S	S
Template Predicted Secondary structure																																							.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		A	T	G	Y	T	V	A	W	L	Y	W	L	T	W	T	V	A	L	G	S	S	F	T	A	A	G	F	C	M	Q	Y	W	F	P	Q	V	P	V	W	.	.	.	.	V	W	C	V	V	F	C	A	I	I	F	G	L	N	V	I	S	T	R	F	F	A	E	G	E	F	W	F	S	L	V	K	V	V	T	I	I
Query Conservation																																									.	.	.	.
Alig confidence																																									.	.	.	.
Template Conservation
Template Sequence		I	I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L	G
Template Known Secondary structure																																		T	T																										T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	I	I	L	G	G	A	A	I	F	G	F	I	P	M	Q	D	G	S	P	A	P	G	L	S	N	I	T	A	E	G	W	F	P	H	G	G	L	P	I	L	M	T	M	V	A	V	N	F	A	F	S	G	T	E	L	I	G	I	A	A	G	E	T	E	N	P	R	K	V	I	P	V	A	I	R	T	T	I
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	I	F	A	G	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.				G	G	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.															.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		A	R	L	I	I	F	F	I	G	T	V	F	V	L	A	A	L	I	P	M	Q	Q	.	V	G	V	E	K	S	P	F	V	L	V	F	E	K	V	G	I	P	Y	A	A	D	I	F	N	F	V	I	L	T	A	I	L	S	A	A	N	S	G	L	Y	A	S	G	R	M	L	W	S	L	S	N	E	R	T	L	P
Query Conservation																								.
Alig confidence																								.
Template Conservation
Template Sequence		L	I	V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P
Template Known Secondary structure																	T	T	S								T	G	G	G																																			T	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	F	A	R	V	T	K	N	G	V	P	L	T	A	L	S	V	S	M	L	G	G	V	L	A	L	F	S	S	V	V	A	P	D	T	V	F	V	A	L	S	A	I	S	G	F	A	V	V	A	V	W	L	S	I	C	A	S	H	F	V	F	R	R	R	H	L	Q	Q	G	K	A	L	S	E	L	H	Y	R
Query Conservation
Alig confidence																																.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template Sequence		E	F	F	E	R	K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	.	.	.	.	.	.	.	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	.	.	.	.	.	.	.	.	R	K	E
Template Known Secondary structure		S	S			T	T	S			S		T																	S		.	.	.	.	.	.	.																										T							.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.								340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.									.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	W	Y	P	L	V	P	V	L	G	F	V	L	C	L	V	A	C	V	G	L	A	F	D	P	A	Q	R	I	A	L	W	C	G	L	P	F	V	A	L	C	Y	G	A	Y	F	L	T	Q	P	R	N	A	K	Q	E	P	E	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	I	F	S	F	I	V	V	L	G	V	F	L	L	L	L	Y	Y	Q	W	I	T	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R	T	F	S	N	N	M	Y	V	K
Template Known Secondary structure																																																								G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.