Job Description Q47689 Confidence 99.93% Date Thu Jan 5 12:37:03 GMT 2012 Rank 3 Aligned Residues 448 % Identity 11% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	T	Q	Q	N	A	P	L	K	R	T	M	K	T	R	H	L	I	M	L	S	L	G	G	V	I	G	T	G	L	F	F	N	T	G	Y	I	I	S	T	T	G	A	A	G	T	L	L	A	Y	L	I	G	A	L	V	V	W	L	V	M	Q	C	L	G	E	L	S	V	A	M	P	E	T	G	A	F	H	V
Query Conservation
Alig confidence																																																																											.	.
Template Conservation																																																																											.	.
Template Sequence		P	S	N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.	I	N	F	T	V
Template Known Secondary structure		S	T	T	S				G	G	G			B															S	T										T	T	T	S																								T								.	.
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	A	R	Y	L	G	P	A	T	G	Y	T	V	A	W	L	Y	W	L	T	W	T	V	A	L	G	S	S	F	T	A	A	G	F	C	M	Q	Y	W	F	P	Q	V	P	V	W	V	W	C	V	V	F	C	A	I	I	F	G	L	N	V	I	S	T	R	F	F	A	E	G	E	F	W	F	S	L	V	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S
Template Known Secondary structure			T	T	T	T	S		T	T	T	T																																																							T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	I	I	A	F	I	I	L	G	G	A	A	I	F	G	F	I	P	M	Q	D	G	S	P	A	P	G	L	S	N	I	T	A	E	G	W	F	P	H	G	G	L	P	I	L	M	T	M	V	A	V	N	F	A	F	S	G	T	E	L	I	G	I	A	A	G	E	T	E	N	P	R	K	V	I	P	V	A	I
Query Conservation
Alig confidence																				.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	.	.	.	.	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A
Template Known Secondary structure																				.	.	.	.	T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	T	I	A	R	L	I	I	F	F	I	G	T	V	F	V	L	A	A	L	I	P	M	Q	Q	V	G	V	E	K	S	P	F	V	L	V	F	E	K	V	G	I	P	Y	A	A	D	I	F	N	F	V	I	L	T	A	I	L	S	A	A	N	S	G	L	Y	A	S	G	R	M	L	W	S	L	S	N	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S
Template Known Secondary structure																																S		S											T																				T	T						T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	P	A	C	F	A	R	V	T	K	N	G	V	P	L	T	A	L	S	V	S	M	L	G	G	V	L	A	L	F	S	S	V	V	A	P	D	T	V	F	V	A	L	S	A	I	S	G	F	A	V	V	A	V	W	L	S	I	C	A	S	H	F	V	F	R	R	R	H	L	Q	Q	G	K	A	L	S	E	L
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.																																																										.
Template Conservation													.	.	.	.	.	.	.	.	.	.																																																										.
Template Sequence		T	F	P	R	V	F	T	F	K	T	G	.	.	.	.	.	.	.	.	.	.	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	.	T
Template Known Secondary structure			S	T	T	T							.	.	.	.	.	.	.	.	.	.											T		G	G	G	T														T	T													T	T	S	T	T								T	B	.	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																																																										.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.											340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.		.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	R	A	P	W	Y	P	L	V	P	V	L	G	F	V	L	C	L	V	A	C	V	G	L	A	F	D	P	A	Q	R	I	A	L	W	C	G	L	P	F	V	A	L	C	Y	G	A	Y	F	L	T	Q	P	R	N	A	K	Q	E	P	E	H	V	A	E
Query Conservation
Alig confidence																																														.
Template Conservation																																														.
Template Sequence		K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	.	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R	N
Template Known Secondary structure		S	S	T	T		T	B	T	T	B																	T		G	G	G														.								T	T	T	S		S			G	G	G	G	G
Template Predicted Secondary structure																																														.
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.