Job Description P45548 Confidence 97.63% Date Thu Jan 5 12:03:05 GMT 2012 Rank 128 Aligned Residues 263 % Identity 16% Template c3gipB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:n-acyl-d-glutamate deacylase; PDBTitle: crystal structure of n-acyl-d-glutamate deacylase from2 bordetella bronchiseptica complexed with zinc, acetate and3 formate ions. Resolution 1.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Y	T	L	A	H	E	H	L	H	I	D	L	S	G	F	K	N	N	V	D	C	R	L	D	Q	Y	A	F	I	C	Q	E	M	N	D	L	M	T	R	G	V	R	N	V	I	E	M	T	N	R	Y	M	G	R	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	I	D	V	H	G	H	D	D	L	M	F	V	E	K	P	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	K	T	S	Q	G	I	T	T	V	V	V	G	N	C	G	V	S	A	A	P	A	P	L	P	G	N	T	A	A	A	L	A	L	L	G	E	T	P	L	F	A	D	V	P
Template Known Secondary structure						S	S				T	T						T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T									T	T			S		S				T	T				G	G	G	G	G	T		S	S				S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.																80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
			64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	Q	F	M	L	D	V	M	R	E	T	G	I	N	V	V	A	C	T	G	Y	Y	Q	D	A	F	F	P	E	H	V	A	T	R	S	V	Q	E	L	A	Q	E	M	V	D	E	I	E	Q	G	I	D	G	T	E	L	K	A	G	I	I	A	E	I	G	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Y	F	A	A	L	D	A	Q	R	P	M	I	N	V	A	A	L	V	G	H	A	N	L	R	L	A	A	M	R	D	P	Q	A	A	P	T	A	A	E	Q	Q	A	M	Q	D	M	L	Q	A	A	L	E	A	G	A	V	G	F	S	T	G	L	A	Y	Q	P	G	A	V	A	Q	A	A	E	L	E	G	L	A
Template Known Secondary structure										S			S	S																	S	S	T	T	S																					T								T	T	S	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
															130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.										.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	K	I	T	P	L	E	E	K	V	F	I	A	A	A	L	A	H	N	Q	T	G	R	P	I	S	T	H	T	S	F	S	T	.	.	.	.	.	.	.	.	.	M	G	L	E	Q	L	A	L	L	Q	A	H	G	V	D	L	S	R	V	T	V	G	H	C
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	A	A	E	R	R	R	L	H	T	S	H	I	R	N	E	A	D	G	V	E	A	A	V	E	E	V	L	A	I	G	R	G	T	G	C	A	T	V	V	S	H	H	K	C	M	M	P	Q	N	W	G	R	S	R	A	T	L	A	N	I	D	R	A	R	E	Q	G	V	E	V	A	L	D	I	Y	P	Y	P
Template Known Secondary structure							T	T								S		S	S	T	T																						T	T					S	G	G	G	T	T	T															T									S		S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.																											.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	K	D	N	L	D	N	I	L	K	M	I	D	L	G	A	Y	V	Q	F	D	T	I	G	K	N	S	Y	Y	P	D	E	K	R	I	A	M	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	R	D	R	G	L	L	N	R	V	M	L	S
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation																																																																											.	.
Template Sequence		G	S	S	T	I	L	I	P	E	R	A	E	T	I	D	D	I	R	I	T	W	S	T	P	H	P	E	C	S	G	E	Y	L	A	D	I	A	A	R	W	G	C	D	K	T	T	A	A	R	R	L	A	P	A	G	A	I	Y	F	A	M	D	E	D	E	V	K	R	I	F	Q	H	P	.	.	C	C	M	V	G
Template Known Secondary structure									G	G	G	T	T	T	S	S								S	S		G	G	G	T	T		B									T	S											S																			S	T	.	.	T
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.						.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence		M	D	I	T	R	R	S	H	L	K	A	N	G	G	Y	G	Y	D	Y	L	L	T	T	F	I	P	Q	L	R	Q	S	.	.	.	.	.	G	F	S	Q	A	D	V	D	V	M	L	R	E	N	P	S	Q	F	F	Q
Query Conservation																																	.	.	.	.	.
Alig confidence						.	.	.	.	.	.																						.	.	.	.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		S	D	G	L	.	.	.	.	.	.	P	N	D	A	R	P	H	P	R	L	W	G	S	F	T	R	V	L	G	R	Y	V	R	E	A	R	L	M	T	L	E	Q	A	V	A	R	M	T	A	L	P	A	R	V	F	G
Template Known Secondary structure						.	.	.	.	.	.	T	T		S	S			T																	T		S	S										T								T
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		364	.	.	.							.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions