Job Description P45548 Confidence 99.07% Date Thu Jan 5 12:03:05 GMT 2012 Rank 72 Aligned Residues 260 % Identity 12% Template c3dc8B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:dihydropyrimidinase; PDBTitle: crystal structure of dihydropyrimidinase from sinorhizobium meliloti Resolution 1.85 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	T	L	A	H	E	H	L	H	I	D	L	S	G	F	K	N	N	V	D	C	R	L	D	Q	Y	A	F	I	C	Q	E	M	N	D	L	M	T	R	G	V	R	N	V	I	E	M	T	N	R	Y	M	G	R	N	A	Q	F	M	L	D	V	M	R	E	T	G	I	N	V	V	A	C	T	G	Y	Y	Q	D
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.																																				.
Template Conservation													.	.	.	.	.	.	.	.																																				.
Template Sequence		G	G	I	D	P	H	T	H	L	E	M	.	.	.	.	.	.	.	.	P	F	M	G	T	Y	S	S	D	D	F	E	S	G	T	R	A	A	L	A	G	G	T	T	M	V	V	D	F	A	L	P	S	G	Q	.	S	L	L	E	A	L	T	M	W	D	N	K	S	T	R	A	N	C	D	Y	S	F	H	M	A
Template Known Secondary structure										T	T		.	.	.	.	.	.	.	.			T	T				S													T	T														.													T	T	T		S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																																				.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.									.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	F	P	E	H	V	A	T	R	S	V	Q	E	L	A	Q	E	M	V	D	E	I	E	Q	G	I	D	G	T	E	L	K	A	G	I	I	A	E	I	G	T	S	E	G	K	I	T	P	L	E	E	K	V	F	I	A	A	A	L	A	H	N	Q	T	G	R	P	I	S	T	H	T	S	F	S	T	M	G	L
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Sequence		I	T	W	W	G	.	.	.	.	.	.	.	.	.	.	.	E	Q	V	F	N	E	M	E	T	I	V	K	D	K	G	I	N	T	F	H	F	M	A	Y	K	G	A	L	M	V	D	.	.	.	.	D	D	E	M	F	S	S	F	Q	R	C	A	A	L	G	A	L	P	L	V	H	A	E	N	G	D	V	V	A
Template Known Secondary structure				S		S	.	.	.	.	.	.	.	.	.	.	.														S				B			B	S		S	T	T	T	T	B			.	.	.	.															T		B				B		S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template SS confidence
		123	.	.	.	.												.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180																													.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Query Sequence		E	Q	L	A	L	L	Q	A	H	G	V	D	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	T	V	G	H	C	D	L	K	D	N	L	D	N	I	L	K	M	I	D	L	G	A	Y	V	Q	F	D	T	I	G	.	.	.	.	.	.
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	Q	A	K	L	L	A	E	G	N	S	G	P	E	A	H	A	Y	S	R	P	A	E	V	E	G	E	A	A	N	R	A	I	M	I	A	D	M	A	G	C	P	V	Y	I	V	H	T	S	C	E	Q	A	H	E	A	I	R	R	A	R	A	K	G	M	R	V	F	G	E	P	L	I	Q	H	L	T	L	D
Template Known Secondary structure										T	T			S							T	S																				T						S	S			S													T	T								B
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
																		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.												250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	S	Y	Y	P	D	E	K	R	I	A	M	L	H	A	L	R	D	R	G	L	L	N	R	V	M	L	S	M	D	I	T	R	R	S	H	.	.	.	.	.	.	.	.	.	.	.	L	K	A	N	G	G	Y	G	Y	D	Y	L	L	T	T	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.
Template Sequence		E	T	E	Y	F	D	K	D	W	D	H	A	A	R	R	V	M	S	P	P	F	R	N	K	L	H	Q	D	S	L	W	A	G	L	A	S	G	S	L	Q	.	.	V	V	A	T	D	H	C	A	F	T	T	E	Q	K	R	F	G	V	G	D	F	T	R	I	P	N	G	T	G	G	L	E	D	R	M	P	M	L
Template Known Secondary structure		G	G	G	G	G		S	S							T			S	S					G	G	G											T	S	S		.	.			B			B									G	G	G	T	T		G	G	G	S							T	T	T
Template Predicted Secondary structure																																										.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		266	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		I	P	Q	L	R	Q	S	G	.	F	S	Q	A	D	V	D	V	M	L	R	E	N	P	S	Q	F	F	Q
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		W	T	Y	G	V	A	T	G	R	I	T	M	N	E	F	V	A	V	T	S	T	N	I	A	K	I	L	N
Template Known Secondary structure						T	T	T	T	S	S										T							T	T
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions