Job Description P45548 Confidence 98.64% Date Thu Jan 5 12:03:05 GMT 2012 Rank 109 Aligned Residues 142 % Identity 17% Template c3b40A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidase; PDBTitle: crystal structure of the probable dipeptidase pvdm from2 pseudomonas aeruginosa Resolution 2.00 Å

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		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.									.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.
Query Sequence		I	A	A	A	L	A	H	N	Q	T	G	R	P	I	S	T	H	T	S	F	S	T	M	G	L	E	Q	L	A	L	L	Q	A	H	G	V	D	L	S	R	V	T	V	G	H	C	D	L	K	D	.	.	.	.	.	.	.	.	N	L	D	N	I	L	K	M	I	D	L	G	A	Y	V	Q	F	D	T	I	G	K
Query Conservation																																																				.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		K	Q	A	V	E	R	L	N	D	L	G	V	I	I	D	V	S	Q	M	S	T	K	A	L	E	Q	V	A	A	L	S	R	.	.	.	.	.	.	A	P	I	V	A	S	H	S	A	P	R	A	L	V	D	I	K	R	N	L	S	D	H	E	M	Q	L	I	K	D	S	G	G	V	I	Q	V	V	G	F	P	A
Template Known Secondary structure												T						T	T	B													S	.	.	.	.	.	.	S									B	T	T	T	S			T	T	S	B											T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.							.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		214	.	.																																																													.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	D	E	K	R	I	A	M	L	H	A	L	R	D	R	G
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	L	R	P	L	S	K	P	T	L	D	K	L	D	A	L	R	A	R	F	D	L	P	P	L	E	G	L	D	Y	A	L	M	P	G	D	P	I	I	T	I	W	P	E	Q	R	F	G	E	Y	A	S	A	L	Y	G	I	L	E	E	E	P	K	A	G	L	K	E	L	V	D	A	I	D	Y	T	V	K	K	V
Template Known Secondary structure				S																	T	T						S	S	T	T	T	S	S				G	G	G	G	G	S																		T	S				B
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	N	R	V	M	L	S	M	D	I	T	R	R	S	H	L	K	A	N	G	G	Y	G	Y	D	Y	L	L	T	T	F	I	P	Q	L	R	Q	S	G	F	S	Q	A	D	V	D	V	M	L	R	E	N	P	S	Q	F	F	Q
Query Conservation
Alig confidence																		.	.	.
Template Conservation																		.	.	.
Template Sequence		G	I	D	H	V	G	I	S	S	D	F	N	D	G	G	G	.	.	.	V	D	G	W	K	D	V	S	E	I	R	N	V	T	A	E	L	I	T	R	G	Y	S	D	A	D	I	A	K	L	W	G	G	N	F	L	R	A	W	G
Template Known Secondary structure			G	G	G							B	T	T	T			.	.	.	B	B	T	B		S	G	G	G												T										T	T
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.				.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions