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Job DescriptionP45548
Confidence99.03%DateThu Jan 5 12:03:05 GMT 2012
Rank78Aligned Residues260
% Identity14%Templatec2ftwA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:dihydropyrimidine amidohydrolase; PDBTitle: crystal structure of dihydropyrimidinase from dictyostelium discoideum
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60.. .......70.........80.....
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Query Sequence  GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRN. AQFMLDVMRETGINVVACTGYYQ
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Template Sequence  GGIDTHTHFQL. . . . . . . . PFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHV
Template Known Secondary structure 

TT
........TT
SS
TT


TT

TT
SS
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   61........70. ........80.........90.........100.........110.........120.........130..
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  DAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG
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Template Sequence  AITWWS. . . . . . . . . . . EQVSREMEILVKERGVNSFCFMAYKNSFMVT. . . . DQEMYHIFKRCKELGAIAQVHAENGDMV
Template Known Secondary structure 


S

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B

BSS
TTTTB

....T
BB
S
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   133..... .140.........150.........160......... 170.........180.........190.......
 
   166...170........ .180.........190.........200.........210
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Query Sequence  LEQLALLQAHGVD. . . . . . . . . . . . . . . . . . . . . . . . . . . . LSRVTVGHCDLKDNLDNILKMIDLGAYVQFDT. . . . . . .
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Template Sequence  FEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGV
Template Known Secondary structure  TT

STS
TT


S


TT



B
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   199200.........210.........220.........230.........240.........250.........260.........270........
 
   211........220.........230.........240........ .250.........260...
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Query Sequence  . . . . . . . . . . . . . . . . IGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRS. . . . . . . . . . . HLKANGGYGYDYLLT
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Template Sequence  DGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGD. . LDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMS
Template Known Secondary structure 
GGGGG
SSTT

SS




TTTS..S


B

B



GGGTT
GGGS


B

TTT
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   279280.........290.........300.........310........ .320.........330.........340.........350......
 
   264.....270. ........280.........290.
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Query Sequence  TFIPQLRQ. SGFSQADVDVMLRENPSQFF
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Template Sequence  IVWENGVNTGKLTWCQFVRATSSERARIF
Template Known Secondary structure  TTTTSS
TT
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   357..360.........370.........380.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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