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Job DescriptionP69797
Confidence69.63%DateThu Jan 5 12:12:00 GMT 2012
Rank26Aligned Residues289
% Identity9%Templatec2qvcC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRI
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Template Sequence  LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQXLESFIAE. . GVNGIAIAPSDPTAVIPTIKKAL
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Query Sequence  VVDKEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPAAAAPKAAPTPAKPMGPND
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Template Sequence  EXGIPVVTLDTDSPDS. . . . . GRYVYIGTDNYQAGYTAGLIXKELLGGKGKVVIGTGSLTAXNSLQRIQGFKDAIKDSEI
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Query Sequence  YMVIGLARIDDRLIHGQVATRWTKETN. VSRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVD. VAKMIRVYNNPKYAGE
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Template Sequence  EIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGP. AQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQ. .
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Query Sequence  RVMLLFTNP. . . . . . . . TDVERLVEGGVKI. . TSVNVGGMAFRQGKTQVNNAVSVDEKDI. EAFKKLNARGIEL
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Template Sequence  . . ATXGQRPYXXGYLSVTVLYLXNKIGVQNTLXXLPKVKVDGKVDYVIDTGVDVVTPENLDEYLKKXEELGIPI
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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