Job Description P76459 Confidence 96.84% Date Thu Jan 5 12:23:04 GMT 2012 Rank 43 Aligned Residues 155 % Identity 15% Template c3ecsD_ PDB info PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha Resolution 2.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		A	K	Q	R	I	A	R	R	V	A	Q	E	L	R	D	G	D	I	V	N	L	G	I	G	L	P	T	.	.	.	M	V	A	N	Y	L	P	E	G	I	H	I	T	L	Q	S	E	N	G	F	L	G	L	G	P	V	T	T	A	H	P	D	L	V	N	A	G	G	Q	P	C	G	V	L	P	G	A	A	M	F
Query Conservation																													.	.	.
Alig confidence																													.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.
Template Sequence		S	R	N	K	I	A	D	L	C	H	T	F	I	K	D	G	A	T	I	L	T	H	A	Y	S	R	V	V	L	R	V	L	E	A	A	V	A	A	K	K	R	F	S	V	Y	V	T	E	S	.	.	.	.	.	.	.	.	Q	P	D	L	S	G	K	K	X	A	K	A	L	C	H	L	N	V	P	V	T	V	V
Template Known Secondary structure												T	T			T	T							S															T	T											.	.	.	.	.	.	.	.	T	T	T	T											T	T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.									.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	S	A	M	S	F	A	L	I	R	G	G	H	I	D	A	C	V	L	G	G	L	Q	V	D	E	E	A	N	L	A	N	W	V	V	P	G	K	M	V	P	G	M	G	G	A	M	D	L	V	T	G	S	R	K	V	I	I	A	M	E	H	C	A	K	D	G	S	A	K	I	L	R	R	C	T	M	P	.	.
Query Conservation																																																																																.	.
Alig confidence													.	.																						.	.	.	.	.	.	.																																						.	.
Template Conservation													.	.																						.	.	.	.	.	.	.
Template Sequence		L	D	A	A	V	G	Y	I	X	E	K	.	.	A	D	L	V	I	V	G	A	E	G	V	V	E	N	G	G	I	I	N	K	I	.	.	.	.	.	.	.	G	T	N	Q	X	A	V	C	A	K	A	Q	N	K	P	F	Y	V	V	A	E	S	F	K	F	V	R	L	F	P	L	N	Q	Q	D	V	P	D	K
Template Known Secondary structure			G	G	G					G	G	G	.	.		S							S				T	T	S						T	.	.	.	.	.	.	.	T											T	T									G	G	G	B		S				S	S	G	G	G	S
Template Predicted Secondary structure													.	.																						.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210								.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
																				158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	A	Q	H	A	V	H	M	L	V	T	E	L	A	V	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	K	Y	K	A	D	G	Q	D	L	K	E	E	H	P	W	V	D	Y	T	A	P	S	L	I	T	L	L	F	T	D	L	G	V	L
Template Known Secondary structure				S	S					S							S						G	G	G		S					T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions