Return to main results Retrieve Phyre Job Id

Job DescriptionP09373
Confidence48.93%DateThu Jan 5 11:02:15 GMT 2012
Rank18Aligned Residues40
% Identity23%Templatec3gr0D_
PDB info PDB header:membrane proteinChain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362)
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   661........670.........680.........690.........700.........710
Predicted Secondary structure 
















Query SS confidence 

















































Query Sequence  KDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNV
Query Conservation    
  

 

 
  
    
    

 







  
   

 





Alig confidence 












......

















....








Template Conservation   
 




   
 ......
  
  
  

  
   
....
  





Template Sequence  KGGVTFVIQGALD. . . . . . DVEILRARQFVDSYYRTW. . . . GGRYVQFAI
Template Known Secondary structure  TT
S


..........
SSS
Template Predicted Secondary structure 






..........


Template SS confidence 

















































   320.........330.. .......340.........350 .........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions