Job Description P09373 Confidence 100.00% Date Thu Jan 5 11:02:15 GMT 2012 Rank 5 Aligned Residues 661 % Identity 21% Template c2f3oB_ PDB info PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus Resolution 2.90 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.											.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																.						.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																																																.						.	.	.	.	.	.	.	.	.	.											.
Query Sequence		I	T	S	H	D	A	G	Y	I	N	K	Q	L	E	K	I	V	G	L	Q	T	E	A	P	L	K	R	A	L	I	P	F	G	G	I	K	M	I	E	G	S	C	K	A	Y	N	.	R	E	L	D	P	.	.	.	.	.	.	.	.	.	.	M	I	K	K	I	F	T	E	Y	R	.	K	T	H	N	Q	G	V
Query Conservation																																																.						.	.	.	.	.	.	.	.	.	.											.
Alig confidence											.																																					.						.	.	.	.	.	.	.	.	.	.											.
Template Conservation											.
Template Sequence		V	L	E	N	I	P	I	Q	I	.	L	D	S	E	L	I	V	G	T	M	L	P	N	P	P	G	A	I	I	F	P	E	G	V	G	L	R	I	I	N	E	L	D	S	L	P	N	R	E	T	N	R	L	M	V	D	E	E	D	A	K	V	L	R	E	E	I	A	P	Y	W	Q	R	K	T	I	E	A	F	A
Template Known Secondary structure						S					.		T	T		S	S				S	S	S	S	S	S						T	T	T	T	T					T	T	T	T	T	G	G	G		S	S	S			B			S								T	T						T	T		S
Template Predicted Secondary structure											.
Template SS confidence
		50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence		F	D	V	Y	T	P	D	I	L	R	C	R	K	S	G	V	L	T	G	L	P	D	A	Y	G	R	G	R	I	I	G	D	Y	R	R	V	A	L	Y	G	I	D	Y	L	M	K	D	.	.	.	K	L	A	Q	F	T	S	L	Q	A	D	L	E	N	G	V	N	L	E	Q	T	I	R	L	R	E	E	I	A	E
Query Conservation																																																	.	.	.
Alig confidence																				.																													.	.	.
Template Conservation																				.
Template Sequence		F	P	L	M	P	D	I	M	Q	I	L	Y	T	G	S	V	F	V	.	L	T	E	I	A	G	I	S	H	V	A	V	N	Y	P	Y	L	L	R	R	G	F	R	W	F	L	E	E	S	E	R	R	I	R	A	L	E	E	S	G	V	Y	E	G	E	K	Y	S	F	Y	Q	A	A	K	I	V	S	E	A	V	I
Template Known Secondary structure		G	G	G	S									T	S	S	S			.			G	G	G														T	T																			T	T	S
Template Predicted Secondary structure																				.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		227	.																		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	L	G	Q	M	K	E	M	A	A	K	Y	G	Y	D	I	S	G	P	A	T	N	A	Q	E	A	I	Q	W	T	Y	F	G	Y	L	A	A	V	K	S	Q	N	G	A	A	M	S	F	G	R	T	S	T	F	L	D	V	Y	I	E
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	G	L	R	Y	S	K	L	A	E	E	L	A	E	S	E	D	G	E	R	R	E	E	L	L	K	I	A	E	I	C	R	K	V	P	A	E	K	P	E	T	F	W	E	A	V	Q	F	V	W	L	V	Q	S	A	L	H	Q	E	N	Y	E	Q	A	I	S	M	G	R	I	D	Q	Y	L	Y	P	F	F	K
Template Known Secondary structure																T	T	S																		T	T	T	S				S																			S		S	S						S					S
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	L	K	A	G	K	I	T	E	Q	E	A	Q	E	M	V	D	H	L	V	M	K	L	R	M	V	R	F	L	R	T	P	E	Y	D	E	L	F	S	G	D	P	I	W	A	T	E	S	I	G	G	M	G	L	D	G	R	T	L	V	T	K	N	S	F	R	F	L	N	T	L	Y	T	M	G	P	S	P	E
Query Conservation
Alig confidence																																																																													.
Template Conservation																																																																													.
Template Sequence		K	D	I	G	E	G	R	I	N	R	E	L	A	F	D	I	L	A	N	L	W	I	K	T	N	E	I	V	P	A	F	D	S	L	L	E	Q	Y	F	S	G	Q	A	T	N	Q	A	V	T	I	G	G	C	D	I	Y	G	N	D	A	T	N	E	L	T	Y	L	M	L	E	V	T	D	R	L	.	R	L	R	Q
Template Known Secondary structure				T	T	T	T	S	S																T	T	S	B												S	T	T	T											B		T	T	S		B																	.			S
Template Predicted Secondary structure																																																																													.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410									.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																										.																		.	.	.	.	.	.	.	.																									.
Query SS confidence																										.																		.	.	.	.	.	.	.	.																									.
Query Sequence		P	N	M	T	I	L	W	S	E	K	L	P	L	N	F	K	K	F	A	A	K	V	S	I	.	D	T	S	S	L	Q	Y	E	N	D	D	L	M	R	P	D	F	.	.	.	.	.	.	.	.	N	N	D	D	Y	A	I	A	C	C	V	S	P	M	I	V	G	K	Q	M	Q	F	F	G	.	A	R	A	N	L
Query Conservation																										.																		.	.	.	.	.	.	.	.																									.
Alig confidence																										.																		.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		P	N	V	H	V	R	I	N	K	G	S	P	E	S	F	L	K	R	L	A	E	A	I	S	S	G	C	N	N	L	A	L	F	F	D	D	A	A	V	K	A	L	K	N	A	E	V	D	D	R	D	A	L	N	Y	T	T	D	G	C	V	E	I	A	P	F	G	N	S	F	T	S	S	D	A	A	L	I	N	V
Template Known Secondary structure		S								T	T	S														T	T																			T	T								T					T	T	T					S	S	S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	T	M	L	Y	A	I	N	G	G	V	D	E	K	L	K	M	Q	V	G	P	K	S	E	P	I	K	G	D	V	L	N	Y	D	E	V	M	E	R	M	D	H	F	M	D	W	L	A	K	Q	Y	I	T	A	L	N	I	I	H	Y	M	H	D	K	Y	S	Y	E	A	S	L	M	A	L	H	D	R	D	V
Query Conservation
Alig confidence																											.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence		A	K	A	L	E	Y	A	L	N	E	G	V	D	L	Q	F	G	Y	E	F	G	A	K	T	E	.	.	.	.	K	P	K	F	L	E	D	L	L	E	K	L	R	E	Q	V	S	H	I	V	K	L	V	V	R	G	S	N	V	L	S	Y	A	N	A	E	V	K	P	T	P	L	L	S	L	C	V	E	D	C	F
Template Known Secondary structure										T	T	T	B		T	T	T			B		S					.	.	.	.				S																																										T	S	T	T
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.					.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
														520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.					.	550	.	.	.	.	.	.	.	.	.	560	.	.								.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.															.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.															.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	I	R	T	M	A	C	G	I	A	G	L	S	V	A	A	D	S	L	S	A	I	K	Y	A	K	V	K	P	I	.	.	.	.	R	D	E	D	G	L	A	I	D	F	E	I	E	G	.	.	.	.	.	.	.	E	Y	P	Q	F	G	N	N	D	P	R	V	D	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.															.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																										.				.	.	.	.															.	.	.	.	.	.	.
Template Conservation																																							.
Template Sequence		E	K	G	V	D	V	S	R	G	G	A	R	Y	N	F	T	G	I	Q	A	V	G	I	A	D	V	G	D	S	L	V	A	I	E	G	A	L	.	N	A	G	Y	S	M	D	D	I	V	E	A	C	R	K	N	F	V	G	Y	E	K	L	H	K	L	L	L	Q	S	P	K	Y	G	N	D	D	D	A	A	D	K
Template Known Secondary structure				T			T	T	T	T		S	S																										.		T	T												T	T	T	S	S											S			T	T	S	S
Template Predicted Secondary structure																																							.
Template SS confidence
		523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	V	D	L	V	E	R	F	M	K	K	I	Q	K	L	H	T	Y	R	D	A	I	P	T	Q	S	V	L	T	I	T	S	N	V	V	Y	G	K	K	T	G	N	T	P	D	G	R	R	A	G	A	P	F	G	P	G	A	N	P	M	H	G	R	D	Q	K	G	A	V	A	S	L	T	S	V	A	K	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	T	K	M	V	L	E	W	Y	C	E	E	V	N	R	H	R	N	F	R	G	G	K	F	A	A	G	C	Y	P	M	T	T	N	V	G	F	G	F	F	T	S	A	L	P	S	G	R	K	S	G	E	P	L	N	P	G	V	S	P	S	T	G	M	D	R	E	G	V	T	A	V	I	N	S	A	S	K	L	S
Template Known Secondary structure																T		B		T	T	S	S									T	T													T	T	S			T	T						T	T	S			T	T				S		S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	Y	A	K	D	G	I	S	Y	T	F	S	I	V	P	N	A	L	G	K	D	D	E	V	R	K	T	N	L	A	G	L	M	D	G	Y	F	H	H	E	A	S	I	E	G	G	Q	H	L	N	V	N	V	M	N	R	E	M	L	L	D	A	M	E	N	P	E	K	Y	P	Q	L	T	I	R	V	S	G	Y
Query Conservation
Alig confidence																					.	.	.																		.	.	.	.	.
Template Conservation																					.	.	.																		.	.	.	.	.
Template Sequence		Y	E	N	L	P	N	G	A	S	L	T	I	N	L	S	S	D	V	L	.	.	.	G	E	K	G	D	A	V	I	E	A	L	I	K	S	S	M	E	.	.	.	.	.	L	G	V	M	H	V	Q	F	N	I	L	K	E	D	L	L	R	K	A	Q	Q	E	P	E	K	Y	R	W	L	L	V	R	V	A	G	W
Template Known Secondary structure		G	G	G		T	T														.	.	.		S																.	.	.	.	.	T	T		S																T	T		G	G	G	G	T	T						S	S	S
Template Predicted Secondary structure																					.	.	.																		.	.	.	.	.
Template SS confidence
		682	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700				.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.						.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.
		737	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	R	F	N	S	L	T	K	E	Q	Q	Q	D	V	I	T	R	T	F	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	Y	F	V	E	L	S	R	P	V	Q	E	E	V	I	R	R	I	S	C	R
Template Known Secondary structure					G	G	G	S										T	T		B
Template Predicted Secondary structure
Template SS confidence
		754	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.