Job Description P41067 Confidence 99.87% Date Thu Jan 5 12:01:24 GMT 2012 Rank 1 Aligned Residues 177 % Identity 15% Template c3jqoV_ PDB info PDB header:transport protein Chain: V: PDB Molecule:traf protein; PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system Resolution 2.60 Å

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		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		I	Q	R	K	V	F	T	R	N	E	G	K	Q	G	P	S	L	P	Y	I	P	S	G	S	F	A	K	A	M	L	I	E	G	A	.	.	D	A	N	A	S	V	T	G	N	E	S	T	V	P	M	Q	L	R	I	T	G	L	V	E	M	P	N	S	K	T	Y	D	A	T	G	C	F	V	G	L	E	A	W	G
Query Conservation																																				.	.
Alig confidence																																				.	.																.															.	.
Template Conservation																																																					.															.	.
Template Sequence		T	P	A	R	L	K	A	S	R	A	G	V	X	A	N	P	S	L	T	V	P	K	G	K	X	I	P	C	G	T	G	T	E	L	D	T	T	V	P	G	Q	V	S	C	R	V	S	Q	D	V	Y	.	S	A	D	G	L	V	R	L	I	D	K	G	S	W	.	.	V	D	G	Q	I	T	G	G	I	K	D	G
Template Known Secondary structure															S		G	G	G				T	T								S	S				T	T	S										S				.		T	T	S		S					T	T			.	.							S				T	T
Template Predicted Secondary structure																																																					.															.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	S	S	E	R	A	I	V	R	T	R	N	I	S	C	L	K	D	G	K	T	I	D	M	P	I	K	G	H	V	S	F	R	G	K	N	G	I	K	G	E	V	V	M	R	N	G	K	I	L	G	W	A	W	G	A	G	F	V	D	G	I	G	Q	G	M	E	R	A	S	Q	P	A	V	G	L	G	A	T
Query Conservation
Alig confidence			.	.	.											.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.											.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	.	.	.	A	R	V	F	V	L	W	E	R	I	.	R	N	D	Q	D	G	T	I	V	N	I	D	S	A	G	T	N	S	L	G	S	A	G	I	P	G	Q	V	D	A	H	X	W	E	R	L	R	G	A	I	X	I	S	L	F	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.	.	.											.			T	T	T													T	T			B	S																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.											.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		261				.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	Y	G	A	G	D	V	L	K	M	G	I	G	G	G	A	S	K	A	A	Q	T	L	S	D	Y	Y	I	K	R	A	E	Q	Y	H	P	V	I	P	I	G	A	G	N	E	V	T	V	V	F	Q	D	G	F	Q	L	K	T	V	E	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	T	A	Q	L	A	S	E	A	L	R	S	Y	X	S	I	P	P	T	L	Y	D	Q	Q	G	D	A	V	S	I	F	V	A	R	D	L	D	F	S	G	V	Y	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																S	S								T	T									S					T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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