Job Description P41067 Confidence 99.84% Date Thu Jan 5 12:01:24 GMT 2012 Rank 2 Aligned Residues 171 % Identity 19% Template c2bhvC_ PDB info PDB header:bacterial protein Chain: C: PDB Molecule:comb10; PDBTitle: structure of comb10 of the com type iv secretion system of2 helicobacter pylori Resolution 3.00 Å

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		I	P	S	G	S	F	A	K	A	M	L	I	E	G	A	.	.	D	A	N	A	S	V	T	G	N	E	S	T	V	P	M	Q	L	R	I	T	G	L	V	E	M	P	N	S	K	T	Y	D	A	T	G	C	F	V	G	L	E	A	W	G	D	V	S	S	E	R	A	I	V	R	T	R	N	I	S	C	L	K	D
Query Conservation																	.	.
Alig confidence																	.	.																		.													.	.														.	.	.											.
Template Conservation																																				.													.	.														.	.	.											.
Template Sequence		I	T	A	D	K	M	I	P	A	F	L	I	T	P	I	S	S	Q	I	A	G	K	V	I	A	Q	V	E	S	D	I	F	A	H	.	M	G	K	A	V	L	I	P	K	G	S	K	.	.	V	I	G	Y	Y	S	N	N	N	K	M	G	E	.	.	.	Y	R	L	D	I	V	W	S	R	I	.	I	T	P	H
Template Known Secondary structure				T	T								S	S				S	S	S										S					S	.	S	S	S						T	T			.	.											S	S		.	.	.											.			T	T
Template Predicted Secondary structure																																				.													.	.														.	.	.											.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.	240		.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	T	I	D	M	P	I	K	G	H	V	S	F	R	G	K	N	G	I	K	G	E	V	V	M	R	N	G	K	I	L	G	W	A	W	G	A	G	F	V	D	G	I	G	Q	G	M	E	R	A	S	Q	P	A	V	G	L	G	A	T	A	A	Y	G	A	G	D	V	L	K	M	G	I	G	G	G	A	S	K
Query Conservation
Alig confidence								.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	N	I	M	L	.	.	.	.	.	.	.	T	N	A	Y	N	G	L	V	G	E	L	I	E	R	N	F	Q	R	Y	G	V	P	L	L	L	S	T	L	T	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	I	G	I	T	G	D	Y	L	L	M	Q	L	M	R	Q	S	G	M
Template Known Secondary structure							S	.	.	.	.	.	.	.	S																		T	S		S		S						S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T		T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250								.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.																	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	Q	T	L	S	D	Y	Y	I	K	R	A	E	Q	Y	H	P	V	I	P	I	G	A	G	N	E	V	T	V	V	F	Q	D	G	F	Q	L	K	T	V	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	N	Q	V	V	N	Q	I	L	R	D	K	S	K	I	A	P	I	V	V	I	R	E	G	S	R	V	F	I	S	P	N	T	D	I	F	F	P	I	P	R	E
Template Known Secondary structure																	S								T	T								S	S								B	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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