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Job DescriptionP24240
Confidence99.83%DateThu Jan 5 11:41:32 GMT 2012
Rank70Aligned Residues306
% Identity21%Templated1ur4a_
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases beta-glycanases
Resolution2.2

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10......... 20.........30.........40.........50.........60.........70.........80
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Query Sequence  FPESFLWGGALAANQS. . . EGAFREGDKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALM
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Template Sequence  LRKDFIKGVDVSSIIALEESGVAFYNESGKKQ. DIF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KTL
Template Known Secondary structure 

TT

TTTT


B
TTS
B
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   20.........30.........40.........50. ... ...
 
   81........90.........100...... ...110.........120.........130... ......140.........150
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Query Sequence  AEMGFKVFRTSIAWSRLFPQGDEITP. NQQGIAFYRSVFEECKKYGIEPLVTLC. . . . . . . . . HFDVPMHLVTEYGSWRN
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Template Sequence  KEAGVNYVRVRI. WNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAW. . . . ANLNF
Template Known Secondary structure  TT

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S

B
TT

B
STT


TT

SSSS

SSS




GGG....TT

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   58.60......... 70.........80.........90.........100.........110.........120....... ..130..
 
   151........160.........170 .........180.........190.........200.........210.........220.......
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Query Sequence  RKLVEFFSRYARTCFEAFDG. . . LVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASALATKIAHEV
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Template Sequence  EDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETN. . . . . . . . . GGLAGETDWAKMSQLFN. . . . . . . . . . AGSQAVRET
Template Known Secondary structure  TT

SSS
S.........S
BTTB

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   133......140.........150.........160....... ..170.........180.... .....190...
 
   228.230.........240.........250.........260.........270.........280.........290.........300.......
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Query Sequence  NPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGTYPAYSARVFREKGVTINKAPGDDEILKNTVDFVS
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Template Sequence  DSNILVALHFTNPE. . . . . . . . . . . . . . . . TSGRYAWIAETLHRHHVD. . . . . . . . . . . . . . . . . . . . . . . . . . . YDVFA
Template Known Secondary structure 
TTS

TT................STTTT

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S
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   194.....200....... ..210.........220..... ....230
 
   308.310.........320.........330.........340.........350.........360.........370....
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Query Sequence  FSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENG. . . . . . . . . . . . .
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Template Sequence  SSYY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PFWHGTLKNLTSVLTSVADTYGKKVMVAETSYTYTAEDGDGHGN
Template Known Secondary structure 
................................TTTS






S
S

SSSS

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   231... .....240.........250.........260.........270........
 
   375....380.........390.........400.........410......... 420.......
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Query Sequence  LGAKDEFAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTW. . . . . GCIDLVSA. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TAPKNGQTLNNPVTVQGQANAVRDVIQAVSDV. . . GEAGIGVFYWEPAWIPVGPAHRLEKNKALWETYGSGWATSYAAEY
Template Known Secondary structure  SSS
TTS


S
SSTT...
TT
TT


SS
GGG

SSB
GGGTTT
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   279280.........290.........300.........310 .........320.........330.........340.........350.....
 
   428.430.........440.........450.........460.....
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Query Sequence  . . . . . . . . . . STGEMSKRYGFVFVDRDDAGNGTLTRTRKKSFWWYKKV
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Template Sequence  DPEDAGKWFGGSA. VDNQ. ALF. . . . . . . . . . DFKGRPLPSLHVFQYV
Template Known Secondary structure 
TTT
BS
S.
GGG.
SB..........
TTS
B
GGGG
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   356...360........ .370.. ... ....380.........390.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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