Return to main results Retrieve Phyre Job Id

Job DescriptionP24240
Confidence93.75%DateThu Jan 5 11:41:32 GMT 2012
Rank157Aligned Residues186
% Identity18%Templated1odza_
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases beta-glycanases
Resolution1.4

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   129130.. ....... 140.........150.........160.........170 .........180....
Predicted Secondary structure  .




..................






.....






Query SS confidence 



.






. . . . . . . . . . . . . . . . . .






























. . . . .













Query Sequence  LVTL. CHFDVPM. . . . . . . . . . . . . . . . . . HLVTEYGSWRNRKLVEFFSRYARTCFEAFDG. . . . . LVKYWLTFNEINIM
Query Conservation 



. 




 .................. 
    


 
   
  
  

      


.....

  
 




   
Alig confidence 



.






..................






























.....









....
Template Conservation 


 


   
            
  
        
 
          

 

     
 
     



 

 

....
Template Sequence  IITVSSHFDNPKTDTQKGVWPVGTSWDQTPAVVDSLPGGAYNPVLNGYLDQVAEWANNLKDEQGRLIPVIFRLYHE. . . .
Template Known Secondary structure 




TTTGGG
SSTTTTSTT

S

STTTSTTSTTT
B
TTS
B


S
S....
Template Predicted Secondary structure 




































....
Template SS confidence 















































































   137..140.........150.........160.........170.........180.........190.........200.........210..
 
   185....190.........200.........210.........220.........230 .........240.........250.........260...
Predicted Secondary structure 



















.











Query SS confidence 













































.
































Query Sequence  LHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASALATKIAHEVNPQ. NQVGCMLAGGNFYPYSCKPEDVWAALEKDRENL
Query Conservation      
  
                     
 


 
          .  


        
      
  

        
Alig confidence  .....


















..........











.


...



















.......
Template Conservation  ..... 

 




        

.......... 


   
 
    
 ... 




              .......
Template Sequence  . . . . . NTGSWFWWGDKQSTPEQYK. . . . . . . . . . QLFRYSVEYLRDVKGV. . . RNFLYAYSPNNFWDVTEANY. . . . . . .
Template Known Secondary structure  .....TTSSSSTTSTTSS
..........TTS

...
S

B

SS

.......
Template Predicted Secondary structure  .....













..........



...









.......
Template SS confidence 















































































   213......220.........230. ........240....... ..250.........260.......
 
   264.....270.........280.........290.........300.........310.........320.........330.........340...
Predicted Secondary structure 
























































Query SS confidence 















































































Query Sequence  FFIDVQARGTYPAYSARVFREKGVTINKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSD
Query Conservation     
    
 

                   
   
    







    
                         
 
Alig confidence  .........................






.....










..........














.......
Template Conservation  .........................   



..... 





 
 
..........               .......
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . LERYPGD. . . . . EWVDVLGFDTY. . . . . . . . . . GPVADNADWFRNVVA. . . . . . .
Template Known Secondary structure  .........................SS


T.....TT
S

..........
SSS
.......
Template Predicted Secondary structure  .........................



.....



..........







.......
Template SS confidence 















































































   268.270.... .....280..... ....290.........300
 
   344.....350.........360.........370.........380.........390.........400.....
Predicted Secondary structure 





















Query SS confidence 





























































Query Sequence  WGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEFAANGEINDDYRISYLREHIRAMGE
Query Conservation    
 
 
 

   
     

  

 




              
  
  

   
     
Alig confidence  .........


































......











Template Conservation  ......... 
      
   

  



 
             ...... 
    
  
  
Template Sequence  . . . . . . . . . NAALVARMAEARGKIPVISGIGIRAPDIEAGLYDN. . . . . . QWYRKLISGLKA
Template Known Secondary structure  .........T

B

TT


T......T
Template Predicted Secondary structure  .........


















......
Template SS confidence 





























































   301........310.........320.........330..... ....340.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions