Job Description P24240 Confidence 98.51% Date Thu Jan 5 11:41:32 GMT 2012 Rank 116 Aligned Residues 305 % Identity 14% Template c3clwF_ PDB info PDB header:structural genomics, unknown function Chain: F: PDB Molecule:conserved exported protein; PDBTitle: crystal structure of conserved exported protein from bacteroides2 fragilis Resolution 2.20 Å

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		83	.	.	.	.	.	.	90	.	.									.	.	.	.	.	.	.	100	.	.									.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query Sequence		M	G	F	K	V	F	R	T	S	I	.	.	.	.	.	.	.	.	A	W	S	R	L	F	P	Q	G	D	.	.	.	.	.	.	.	.	E	I	T	P	N	Q	Q	G	I	A	F	Y	R	S	V	F	E	E	C	K	K	Y	G	I	E	P	L	V	T	L	C	H	F	D	V	P	M	H	L	V	T	E	Y	G
Query Conservation												.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.																										.																	.
Template Conservation																																																															.																	.
Template Sequence		M	A	L	T	N	W	R	V	N	I	G	A	G	S	Y	E	N	R	E	A	K	E	V	D	N	S	W	N	R	T	E	C	F	L	S	P	D	G	K	Y	D	F	T	K	Q	A	G	Q	Q	W	F	M	K	A	A	R	E	R	G	M	N	.	N	F	L	F	F	T	N	S	A	P	Y	F	M	T	R	S	.	A
Template Known Secondary structure					S									S	T	T	T	T	T	T	S	S			S	S	S	T	T					S	B		T	T	S		B		T	T	S	S													T	T			.							S	S			G	G	G	S	S	S	.	S
Template Predicted Secondary structure																																																															.																	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.
		147	.										.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.																							.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.																							.	.	.
Query Sequence		S	W	.	.	.	.	.	.	.	.	.	R	N	R	K	L	V	E	F	F	S	R	Y	A	R	T	C	F	E	A	F	D	G	.	.	.	L	V	K	Y	W	L	T	F	N	E	I	N	I	M	L	H	S	P	F	S	G	A	G	L	V	F	E	E	G	E	N	Q	D	Q	V	K	Y	Q	A	A	H	H	Q	L
Query Conservation				.	.	.	.	.	.	.	.	.																							.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.																							.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.
Template Sequence		S	T	V	S	T	D	Q	D	C	I	N	L	Q	N	D	K	F	D	D	F	A	R	F	L	V	K	S	A	Q	H	F	R	E	Q	G	F	H	V	N	Y	I	S	P	N	N	E	P	N	G	Q	W	H	A	N	S	F	Q	E	G	S	F	A	T	K	.	.	.	.	.	.	.	.	.	A	D	L	Y	R	M	V
Template Known Secondary structure		S	S	B		S		S	S	S		S	S		T	T																			T	T										S		T	T	S		G	G	G			S	S		B						.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.										.	.	230	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	S	A	L	A	T	K	I	A	H	E	V	N	P	Q	N	Q	V	G	C	M	L	A	G	G	N	F	Y	P	Y	S	C	K	P	E	D	V	W	A	A	L	E	K	D	R	E	N	L	F	F	I	D	V	Q	A	R	G	T	Y	P	A	Y	S	A	R	V	F	R	E	K	G	V	T	I	N	K	A	P	G
Query Conservation
Alig confidence				.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	.	.	.	L	D	K	A	I	S	E	A	Q	I	D	T	K	I	L	I	P	E	V	G	D	M	K	Y	L	F	E	I	D	S	I	A	K	T	P	D	D	I	I	H	S	M	F	Y	K	D	G	Q	Y	S	V	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				.	.	.									T		S									S	S	G	G	G	G	S				S		T	T	S										S	T	T	S	T	T			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.						.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.
Query Sequence		D	D	E	I	L	K	N	T	V	D	F	V	S	F	S	Y	Y	A	S	R	C	A	S	A	E	M	N	A	N	N	S	S	A	A	N	V	V	K	S	L	R	N	P	Y	L	Q	V	S	D	W	G	W	G	I	D	P	L	G	L	R	I	T	M	N	M	M	Y	D	R	.	.	.	.	.	Y	Q	K	P	L	F
Query Conservation																																																																							.	.	.	.	.
Alig confidence		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	F	K	N	L	F	N	C	V	A	A	H	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	S	A	Y	P	A	T	L	L	V	D	I	R	N	R	I	H	K	E	L	S	A	N	G	H	N	T	K	F	W
Template Known Secondary structure		.	.	.	.		T	T										T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S	S	S																	T	T	S	S
Template Predicted Secondary structure		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						290	.	.	.	.	.	.	.	.	.	300	.	.																																		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		L	V	E	N	G	L	G	A	K	D	E	F	A	A	N	G	E	I	N	D	D	Y	R	I	S	Y	L	R	E	H	I	R	A	M	G	E	A	I	A	D	.	G	I	P	L	M	G	Y	T	T	W	G	C	I	D	L	V	S	A	S	T	G	E	M	S	K	R	Y	G	F	V	F	V	D	R	D	D	A	G	N
Query Conservation																																										.
Alig confidence																				.																						.				.	.																																.	.	.
Template Conservation																				.																										.	.																																.	.	.
Template Sequence		A	S	E	Y	C	I	L	E	K	N	E	E	I	T	M	P	A	S	.	P	E	R	S	I	N	L	G	L	Y	V	A	R	I	I	H	N	D	L	T	L	A	N	A	S	.	.	A	W	Q	W	W	T	A	V	S	L	G	E	D	V	P	I	Q	L	L	P	L	E	G	S	N	G	L	S	L	Q	Y	.	.	.
Template Known Secondary structure												T	T	T		S	S	S		.																					T	S			S	.	.							S			S	S	S	S	S	S							T	T			S	G	G	G	G	T	.	.	.
Template Predicted Secondary structure																				.																										.	.																																.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	L	T	R	T	R	K	K	S	F	W	W	Y	K	K	V	I	A
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	D	G	E	I	S	T	T	K	M	L	W	T	T	A	N	Y	S	F
Template Known Secondary structure		.																		T
Template Predicted Secondary structure		.
Template SS confidence
			407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions