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Job DescriptionP24240
Confidence100.00%DateThu Jan 5 11:41:32 GMT 2012
Rank27Aligned Residues446
% Identity28%Templatec2zoxA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:cytosolic beta-glucosidase; PDBTitle: crystal structure of the covalent intermediate of human cytosolic2 beta-glucosidase
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  VFPESFLWGGALAANQSEGAFREGDKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAE
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Template Sequence  AFPAGFGWAAATAAYQVEGGWDADGKGPCVWDTFTHQGGERVF. . . . . . . . . . . . . KNQTGDVACGSYTLWEEDLKCIKQ
Template Known Secondary structure  B

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TTGGG


BT
TTSSG.............GG

SSSTT
TTT
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   2.......10.........20.........30.........40.... .....50.........60........
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  MGFKVFRTSIAWSRLFPQGDEITPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRYAR
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Template Sequence  LGLTHYRFSLSWSRLLPDGTTGFINQKGIDYYNKIIDDLLKNGVTPIVTLYHFDLPQTLEDQ. GGWLSEAIIESFDKYAQ
Template Known Secondary structure  T
S

STTSSTTS

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BT.TGGGST
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   6970.........80.........90.........100.........110.........120.........130 .........140.......
 
   163......170.........180.........190.........200.........210.........220.........230.. .......
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Query Sequence  TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASALATKIAHEVNPQNQ. . . VGCMLAG
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Template Sequence  FCFSTFGDRVKQWITINQANVLSVMSYDLGM. FPPGIPHFGTGGYQAAHNLIKAHARSWHSYDSLFRKKQKGMVSLSLFA
Template Known Secondary structure  TTT

TTTS

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TTTT


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   148.150.........160.........170........ .180.........190.........200.........210.........220......
 
   240....... ..250......... 260......... 270.........280..... ....290.........300........
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Query Sequence  GNFYPYSC. KPEDVWAALEKD. RENLFFIDVQ. ARGTYPAYSARVFREK. . . . . . . . GVTINKAPGDDEILKNTVDFVSF
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Template Sequence  VWLEPADPNSVSDQEAAKRAITFHLDLFAKPIFIDGDYPEVVKSQIASMSQKQGYPSSRLPEFTEEEKKMIKGTADFFAV
Template Known Secondary structure  SSTT
TTTSS

TT
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TT

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   227..230.........240.........250.........260.........270.........280.........290.........300......
 
   309310.........320....... ..330.........340.........350.........360....... ..370.........380....
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Query Sequence  SYYASRCASAEMNANNSSA. . . ANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKP. LFLVENGLGAKDEFAAN
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Template Sequence  QYYTTRLIKYQENKKGELGILQDAEIEFFPDPSWKNVDWIY. VVPWGVCKLLKYIKDTYNNPVIYITENGFPQSDP. . . .
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TT


ST

TTS
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TTTS





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   307..310.........320.........330.........340....... ..350.........360.........370.........380.
 
   385....390.........400........ .410.........420.........430.........440.........450.........460...
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Query Sequence  GEINDDYRISYLREHIRAMGEAIA. DGIPLMGYTTWGCIDLVSASTGEMSKRYGFVFVDRDDAGNGTLTRTRKKSFWWYK
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Template Sequence  APLDDTQRWEYFRQTFQELFKAIQLDKVNLQVYCAWSLLDNFEWNQG. YSSRFGLFHVDFEDP. . . ARPRVPYTSAKEYA
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GGGG.GG

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   382.......390.........400.........410.........420........ .430.........440... ......450.......
 
   464.....470..
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Query Sequence  KVIASNGED
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Template Sequence  KIIRNNGLE
Template Known Secondary structure  TB

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   458.460......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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