Job Description P24240 Confidence 98.38% Date Thu Jan 5 11:41:32 GMT 2012 Rank 117 Aligned Residues 283 % Identity 12% Template c2wnwB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:activated by transcription factor ssrb; PDBTitle: the crystal structure of srfj from salmonella typhimurium Resolution 2.00 Å

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		74	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.											.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.													.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence									.	.	.													.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		K	E	D	I	A	L	M	.	.	.	A	E	M	G	F	K	V	F	R	T	S	I	.	.	.	.	.	.	.	.	.	.	A	W	S	R	L	F	P	Q	G	D	E	I	T	P	N	Q	Q	G	I	A	F	Y	R	S	.	V	F	E	E	C	K	K	Y	G	I	E	P	L	V	T	L	C	H	F	D	V	P	M
Query Conservation									.	.	.													.	.	.	.	.	.	.	.	.	.																									.
Alig confidence									.	.	.													.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		A	Q	F	L	S	L	Y	F	S	A	Q	E	H	N	Y	T	L	A	R	M	P	I	Q	S	C	D	F	S	L	G	N	Y	A	Y	V	D	S	S	A	D	L	Q	Q	G	R	L	S	F	S	R	D	E	A	H	L	I	P	L	I	S	G	A	L	R	L	N	P	H	M	K	L	M	A	S	P	W	S	P	P	A
Template Known Secondary structure											T	T	T	T										S			S	S	S	S	S				S			S						T	T											T												T	T								S				G
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure						.	.	.	.																													.	.	.
Query SS confidence						.	.	.	.																													.	.	.
Query Sequence		H	L	V	T	.	.	.	.	E	Y	G	S	W	R	N	R	K	L	V	E	F	F	S	R	Y	A	R	T	C	F	E	A	F	D	G	L	.	.	.	V	K	Y	W	L	T	F	N	E	I	N	I	M	L	H	S	P	F	S	G	A	G	L	V	F	E	E	G	E	N	Q	D	Q	V	K	Y	Q	A	A	H	H
Query Conservation						.	.	.	.																													.	.	.
Alig confidence						.	.	.	.																													.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.
Template Sequence		F	M	K	T	N	N	D	M	N	G	G	G	K	L	R	R	E	C	Y	A	D	W	A	D	I	I	I	N	Y	L	L	E	Y	R	R	H	G	I	N	V	Q	A	L	S	V	Q	N	E	P	.	.	.	.	.	.	.	.	.	V	A	V	K	T	W	D	S	C	L	Y	S	V	E	E	E	T	A	F	A	V	Q
Template Known Secondary structure		G	G	B	T	T	S		S	B	S			B	B		G	G	G																	T	T	T								S		S	S	T	.	.	.	.	.	.	.	.	.	T				S	S	B			B
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.										.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	V	A	S	A	L	A	T	K	I	A	H	E	V	N	P	Q	N	Q	V	G	C	M	L	A	G	G	N	F	Y	P	Y	S	C	K	P	E	D	V	W	A	A	L	E	K	D	R	E	N	L	F	F	I	D	V	Q	A	R	G	T	Y	P	A	Y	S	A	R	V	F	R	E	K	G	V	T	I	N	K	A
Query Conservation
Alig confidence						.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	R	P	.	.	.	.	.	R	L	A	R	Q	G	M	D	E	M	E	I	Y	I	W	D	H	D	K	D	G	L	V	D	W	A	E	L	A	F	A	D	E	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T				.	.	.	.	.					T	T		T	T										G	G	G									T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.						.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		P	G	D	D	E	I	L	K	N	T	V	D	F	V	S	F	S	Y	Y	A	S	R	C	A	S	A	E	M	N	A	N	N	S	S	A	A	N	V	V	K	S	L	R	N	P	Y	L	Q	V	S	D	W	G	W	G	I	D	P	L	G	L	R	I	T	M	N	M	M	Y	D	R	Y	.	Q	K	P	L	F	L	V
Query Conservation																																																																										.
Alig confidence		.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation		.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	Y	K	G	I	N	G	L	A	F	H	W	Y	T	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	F	S	Q	I	Q	Y	L	A	Q	C	L	P	D	K	K	L	L	F	S
Template Known Secondary structure		.	.	.	.	.	.	.												T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									259	260	.	.	.	.	.	.	.	.	.	270	.	.	.																																							.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.			.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		E	N	G	L	G	A	K	D	E	F	A	A	N	G	E	I	N	D	D	Y	R	I	S	Y	L	R	E	H	I	R	A	M	G	E	A	I	A	D	G	I	P	L	M	G	Y	T	T	W	G	C	I	D	L	V	S	A	.	.	S	T	G	E	M	S	K	R	Y	G	F	V	F	V	D	R	D	D	A	G	N	G
Query Conservation																																																										.	.
Alig confidence										.	.	.	.	.	.	.	.																										.	.														.	.				.														.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.																										.	.																			.														.	.	.	.	.
Template Sequence		E	G	C	V	P	M	E	S	.	.	.	.	.	.	.	.	D	A	G	S	Q	I	R	H	W	H	T	Y	L	H	D	M	I	G	N	F	K	S	G	C	S	.	.	G	F	I	D	W	N	L	L	L	N	S	E	G	G	P	N	H	Q	.	G	N	L	C	E	A	P	I	Q	Y	D	A	Q	.	.	.	.	.
Template Known Secondary structure						B				.	.	.	.	.	.	.	.	S	T	T																				T			.	.							S				T	T	S				T	T	.				B			S					T	T	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																										.	.																			.														.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.									.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	T	R	T	R	K	K	S	F	W	W	Y	K	K	V	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	V	L	R	R	N	H	S	W	Y	G	I	G	H	F	C	R
Template Known Secondary structure		T	T																T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions