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Job DescriptionP24240
Confidence99.59%DateThu Jan 5 11:41:32 GMT 2012
Rank90Aligned Residues323
% Identity12%Templatec2w5fB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:endo-1,4-beta-xylanase y; PDBTitle: high resolution crystallographic structure of the2 clostridium thermocellum n-terminal endo-1,4-beta-d-3 xylanase 10b (xyn10b) cbm22-1-gh10 modules complexed with4 xylohexaose
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  FPESFLWGGALAANQSEGAFREGDKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAEM
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Template Sequence  YANYFRVGSVLNSGTVNNS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SIKA. . LILREF
Template Known Secondary structure  TTTT

TTTTT
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   199200.........210....... ..220. ......
 
   84.....90.........100.. .......110.........120........ .130.........140. ........150
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Query Sequence  GFKVFRTSIAWSRLFPQGD. . . . . . EITPNQQGIAFYRSVFEECKKYGIEP. . LVTLCHFDVPMHL. . . . . VTEYGSWRN
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Template Sequence  NSITCENEMKPDATLVQSGSTNTNIRVSLNRA. . . . . ASILNFCAQNNIAVRGHTLVWHSQTPQWFFKDNFQDNGNWVSQ
Template Known Secondary structure  SSSTTSTT

TTT.....TT

SSS

GGGGBTTSSTTS
B

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   228.230.........240.........250......... 260.........270.........280.........290.........300..
 
   151........160.........170. ........180.........190.........200.........210.........220.....
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Query Sequence  RKLVEFFSRYARTCFEAFDGL. . . . . VKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASALATKIAH
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Template Sequence  SVMDQRLESYIKNMFAEIQRQYPSLNLYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIEKAFTYAR
Template Known Secondary structure 
TTS
S
B
S
STTB

BSSBTTBBSSTT
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   303......310.........320.........330.........340.........350.........360.........370.........380..
 
   226... 230.........240.........250.........260.........270.........280.........290.........300....
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Query Sequence  EVNP. QNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGTYPAYSARVFREKGVTINKAPGDDEILKNTVD
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Template Sequence  KYAPANCKLYYNDYNE. . . . YWDHKRDCIASICANL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YNKGLLD
Template Known Secondary structure  S
TT
SST....TS.....................................TT


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   383......390........ .400.........410.... .....420.
 
   305....310.........320.........330.........340.........350.........360.........370.........380....
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Query Sequence  FVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEFAAN
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Template Sequence  GVGMQSHINADMNGFSG. . . . . . . . . . . . . . . . . . . . . . . . . . . . IQNYKAALQKYI. NIGCDVQITELDISTENGKF. .
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S
SSSTT
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   422.......430........ .440.........450 .........460.........470
 
   385....390.........400.........410.. .......420.........430.........440.........450.........460..
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Query Sequence  GEINDDYRISYLREHIRAMGEAIADGIP. . LMGYTTWGCIDLVSASTGEMSKRYGFVFVDRDDAGNGTLTRTRKKSFWWY
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Template Sequence  . . . SLQQQADKYKAVFQAAVDINRTSSKGKVTAVCVWGPNDANTWLGS. . QNAPLLFNANNQ. . . . . . . . . . PKPAYNAV
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SS
SSSSTTS
TT
G..GG

SSB
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   471........480.........490.........500.........510..... ....520....... ..530.....
 
   463......
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Query Sequence  KKVIASN
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Template Conservation     
   
Template Sequence  ASIIPQS
Template Known Secondary structure  TSS
GG
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   536...540..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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