Job Description P46852 Confidence 97.26% Date Thu Jan 5 12:04:23 GMT 2012 Rank 47 Aligned Residues 195 % Identity 18% Template c3qacA_ PDB info PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. Resolution 2.27 Å

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		28	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.												.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure													.																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	Y	D	P	N	F	M	G	F	S	.	A	L	R	V	I	N	D	D	V	I	E	A	G	Q	G	F	G	T	H	P	H	K	D	M	E	I	L	T	Y	V	L	E	G	T	V	E	H	.	.	.	.	.	.	.	.	.	.	.	Q	D	S	M	G	N	K	E	Q	V	P	A	G	E	F	Q	I	M	S	A
Query Conservation													.																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																				.																		.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																																	.																																												.	.
Template Sequence		E	V	W	D	S	N	E	Q	E	F	R	C	A	G	V	S	V	I	R	R	T	I	E	P	H	G	L	L	L	P	S	.	F	T	S	A	P	E	L	I	Y	I	E	Q	G	N	G	I	T	G	M	M	I	P	G	C	P	E	T	Y	Q	D	Q	H	Q	K	I	R	H	L	R	E	G	D	I	.	.	F	A	M
Template Known Secondary structure						T	T	S							T										T	T							.			S	S																		T	T																	T	T			.	.
Template Predicted Secondary structure																																	.																																												.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.																																										.
Predicted Secondary structure																																.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	T	G	I	R	H	S	E	Y	N	P	S	S	T	E	R	L	H	L	Y	Q	I	W	I	M	P	E	E	N	G	.	I	T	P	R	Y	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R
Query Conservation																																.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																				.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.
Template Sequence		P	A	G	V	S	H	W	A	Y	N	.	N	G	D	Q	P	L	V	A	V	I	L	I	D	T	A	N	H	A	N	Q	L	D	K	N	F	P	T	R	F	Y	L	A	G	K	P	Q	Q	E	H	S	N	T	G	N	I	F	R	G	F	E	T	R	L	L	A	E	S	F	G	V	S	E	E	I	A	Q	K	L	Q
Template Known Secondary structure			T	T								.		S	S	S										T	T	S	T	T			S		S	S	S						S	S	S					S							G	G	G	G	S										T
Template Predicted Secondary structure												.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.																																	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	F	D	A	V	Q	G	K	Q	L	V	L	S	P	D	A	R	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	K	V	H	Q	D	M	E	L	Y	R	W	A	L	L	K	D	E	Q	S	V	H	Q	I	A	A	E	R
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	Q	D	D	R	G	N	I	V	R	V	E	G	L	H	T	I	C	S	A	R	L	A	V	N	V	D	D	P	S	K	A	D	V	Y	T	P	E	A	G	R	L	T	T	V	N	S	F	N	L	P	I	L	R	H	L	R	L	S	A	A	K	G	V	L	Y	R	N	A	M	M	A	P	H	Y	N	L	N	A
Template Known Secondary structure		T	T	T			S		S										T	T	T	S						T	T		T	T	T		S				T	T	T								T	T	T	S	T	T					T										T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.											.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence																.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		R	V	W	I	Q	V	V	K	G	N	V	T	I	N	.	.	.	.	.	.	.	.	.	.	G	V	K	A	S	T	S	D	G	L	A	I	W	D	E	Q	A	I	S	I	H	A	.	D	S	D	S	E	V	L	L	F
Query Conservation																.	.	.	.	.	.	.	.	.	.																							.
Alig confidence																.	.	.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		H	N	I	M	Y	C	V	R	G	R	G	R	I	Q	I	V	N	D	Q	G	Q	S	V	F	D	E	E	L	S	R	G	Q	L	V	V	V	P	Q	N	F	A	I	V	K	Q	A	F	E	D	G	F	E	W	V	S	F
Template Known Secondary structure																			T	T	S										T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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