 |
Job Description | P46852 | Confidence | 97.94% | Date | Thu Jan 5 12:04:23 GMT 2012 |
Rank | 24 | Aligned Residues | 105 |
% Identity | 24% | Template | c3l2hD_ |
PDB info |
PDB header:isomerase | Chain: D: PDB Molecule:putative sugar phosphate isomerase; |
PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution
|
Resolution | 1.85 Å |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
. | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | R | K | A | N | E | R | G | H | A | N | H | G | W | L | D | . |
. |
. |
. |
. |
. |
. |
S | W | H | T | F | S | F | A | N | Y | Y | D | P | N | F | M | G | F | S | A | L | R | V | I | N | D | D | V | I | E | A | G | . |
Q | G | F | G | T | H | P | H | K | D | M | E | I | L | T | Y | V | L | E | G | T | V | E | H |
Query Conservation |   |
  |
|   |   |   |   |
|
|   |   |   |   |
|
|
|   | . | . | . | . | . | . | . |
|   |   |   |
|
|
|   |   |
|   |
|
|   |   |   |   |
|
|   |
|
|
|   |
|
|
|   |
|   |
|
| . |   |
|
|   |   |
|
|
|
|
|   |
|
|
|
|
|
|
|   |
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   | . | . | . | . | . | . |
|   |
|
|   |
|   |
|
|   |   |
|   |   |   |
|   |
|   |   |   |
|
|   |   |   |
|
|   |
|   |   |   |   |
Template Sequence |   |
L | L | T | A | Q | E | I | S | R | X | K | G | E | H | K | V | H | F | L | N | P | G | A | V | R | V | N | K | S | L | G | D | A | V | G | L | R | H | X | G | . |
. |
. |
. |
. |
. |
I | H | L | I | Q | I | E | P | G | K | E | S | T | E | Y | H | L | H | H | Y | E | E | E | A | V | Y | V | L | S | G | K | G | T | L |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S | S |  |  | . | . | . | . | . | . |  |  |  |  |  |  |
| T | T |
| B | S | S | S | S | B |  |  | S | S |
|
|  |  |  |  |  |  |  | S |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  | . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
76 | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | D | S | M | G | N | K | E | Q | V | P | A | G | E | F | Q | I | M | S | A | G | T | G | I | R | H | S | E | Y | N | P | S | S | T | E | R | L | H | L | Y | Q | I |
Query Conservation |   |
  |
|
|   |
|
|   |   |   |
|   |   |
|   |
|
|   |
|
|
|
|   |
|
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |
|
|
|
Alig confidence |   |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  | . |   |
|
|   |   |   |   |
|   |   |
|
|   |
|   |   |
|   |   | . |   |   |   |
|   |   |   |
| . |   |
|   |
|
|
|   |   |
|
|
|
Template Sequence |   |
T | . |
X | E | N | D | Q | Y | P | I | A | P | G | D | F | V | G | F | P | C | H | . |
A | A | A | H | S | I | S | N | . |
D | G | T | E | T | L | V | C | L | V | I |
Template Known Secondary structure |   |
 | . |  | T | T |  |  |  |  |  |
| T | T |
|  |  |  |  |
| T | T | . | S |
|
|  |  |  |  |
| . |
| S | S | S |
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 | . |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | |
. | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | |
. | . | . | . | . | . | . | . | |
. | 110 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|