Job Description P46852 Confidence 95.63% Date Thu Jan 5 12:04:23 GMT 2012 Rank 77 Aligned Residues 180 % Identity 15% Template c3ehkC_ PDB info PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis Resolution 3.20 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.																.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	D	D	V	I	E	A	G	Q	G	F	G	T	H	P	H	K	D	M	E	I	L	T	Y	V	L	E	G	T	V	E	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	M	G	N	K	E	Q	V	P	A	G	E	F	Q	I	M	S	A	G	T	G	I	R	H	S	E	Y	N	P	S
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.														.
Template Conservation																	.																																																.	.														.
Template Sequence		A	S	R	I	T	I	Q	R	N	G	L	H	L	P	S	.	Y	S	N	A	P	Q	L	I	Y	I	V	Q	G	R	G	V	L	G	A	V	F	S	G	C	P	E	T	F	E	E	S	Q	L	D	R	H	Q	K	T	R	R	I	R	E	G	D	V	.	.	V	A	I	P	A	G	V	A	Y	W	S	Y	N	.	D
Template Known Secondary structure									T	T							.			S	S																		T	T														S							T	T			.	.					T	T								.
Template Predicted Secondary structure																	.																																																.	.														.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.		.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.																																											.	.	.	.	140	.	.	.	.
Predicted Secondary structure																					.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	T	E	R	L	H	L	Y	Q	I	W	I	M	P	E	E	N	G	I	.	T	P	R	Y	E	Q	R	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	V	Q	G	K	Q	L	V
Query Conservation																					.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	Q	E	L	V	A	V	N	L	F	H	V	S	S	D	H	N	Q	L	D	Q	N	P	R	K	F	Y	L	A	G	N	P	E	N	E	F	N	Q	Q	G	Q	G	N	N	V	F	S	G	F	N	T	Q	L	L	A	Q	A	L	N	V	N	E	E	T	A	R	N	L	Q	G	Q	N	D	N	R	N	Q	I	I
Template Known Secondary structure		S	S	S										T	T	S	T	T			S		S	S						S	S	S					S	S	S		T	T					S	G	G	G	S										T	S						T	G	G	G		S	S			S		S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		145	.	.	.	.	150	.	.																																												.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	P	D	A	R	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	K	V	H	Q	D	M	E	L	Y	R	W	A	L	L	K	D	E	Q	S	V	H	Q	I	A	A	E	R
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	V	R	G	N	L	D	F	V	Q	P	P	R	L	E	E	T	F	C	S	L	R	L	K	E	N	I	G	N	P	E	R	A	D	I	F	S	P	R	A	G	R	I	S	T	L	N	S	H	N	L	P	I	L	R	F	L	R	L	S	A	E	R	G	F	F	Y	R	N	G	I	Y	S	P	H	W	N	V	N	A
Template Known Secondary structure				S	S	S			S	S							S	S	G	G	G									S	G	G	G		S				T	T	T							S	T	T	T		G	G	G	T	T	T	T										T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.											.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence																.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		R	V	W	I	Q	V	V	K	G	N	V	T	I	N	.	.	.	.	.	.	.	.	.	.	G	V	K	A	S	T	S	D	G	L	A	I	W	D	E	Q	A	I	S	I	H	A	.	D	S	D	S	E	V	L	L	F
Query Conservation																.	.	.	.	.	.	.	.	.	.																							.
Alig confidence																.	.	.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		H	S	V	V	Y	V	I	R	G	N	A	R	V	Q	V	V	N	E	N	G	D	A	I	L	D	Q	E	V	Q	Q	G	Q	L	F	I	V	P	Q	N	H	G	V	I	Q	Q	A	G	N	Q	G	F	E	Y	F	A	F
Template Known Secondary structure																			T	T	S			S							T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions