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Job DescriptionP46852
Confidence95.63%DateThu Jan 5 12:04:23 GMT 2012
Rank77Aligned Residues180
% Identity15%Templatec3ehkC_
PDB info PDB header:plant proteinChain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60.........70...... ...80.........90.........100.......
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Query Sequence  INDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ. . . . . . . . . . . . . . . DSMGNKEQVPAGEFQIMSAGTGIRHSEYNPS
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Template Sequence  ASRITIQRNGLHLPS. YSNAPQLIYIVQGRGVLGAVFSGCPETFEESQLDRHQKTRRIREGDV. . VAIPAGVAYWSYN. D
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   50.........60.... .....70.........80.........90.........100.........110. ........120.... .
 
   108.110.........120...... ...130..... ....140....
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Query Sequence  STERLHLYQIWIMPEENGI. TPRYEQRRF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DAVQGKQLV
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Template Sequence  GDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQGNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQII
Template Known Secondary structure  SSS
TTSTT

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SSS
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SGGGS
TS
TGGG
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   196...200.........210.........220.........230.........240.........250.........260.........270.....
 
   145....150.. .......160.........170.........180.
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Query Sequence  LSPDARDG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SLKVHQDMELYRWALLKDEQSVHQIAAER
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Template Sequence  QVRGNLDFVQPPRLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNA
Template Known Secondary structure 
SSS

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SSGGG




SGGG
STTTSTTT
GGGTTTT

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   306...310.........320.........330.........340.........350.........360.........370.........380.....
 
   182.......190..... ....200.........210....... ..220......
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Query Sequence  RVWIQVVKGNVTIN. . . . . . . . . . GVKASTSDGLAIWDEQAISIHA. DSDSEVLLF
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Template Sequence  HSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFEYFAF
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TTS

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   416...420.........430.........440.........450.........460.........470.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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