Job Description Q2A0L0 Confidence 100.00% Date Thu Jan 5 12:33:38 GMT 2012 Rank 1 Aligned Residues 432 % Identity 100% Template d2qxfa1 SCOP info Ribonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease Resolution 1.50

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	T	F	L	F	H	D	Y	E	T	F	G	T	H	P	A	L	D	R	P	A	Q	F	A	A	I	R	T	D	S	E	F	N	V	I	G	E	P	E	V	F	Y	C	K	P	A	D	D	Y	L	P	Q	P	G	A	V	L	I	T	G	I	T	P	Q	E	A	R	A	K	G	E	N	E	A	A	F	A	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	T	F	L	F	H	D	Y	E	T	F	G	T	H	P	A	L	D	R	P	A	Q	F	A	A	I	R	T	D	S	E	F	N	V	I	G	E	P	E	V	F	Y	C	K	P	A	D	D	Y	L	P	Q	P	G	A	V	L	I	T	G	I	T	P	Q	E	A	R	A	K	G	E	N	E	A	A	F	A	A	R
Template Known Secondary structure													S	S	S		T	T	T	S												T	T	S		B		S							B				T	T																							B
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	S	L	F	T	V	P	K	T	C	I	L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	P	Y	A	W	S	W	Q	H	D	N	S	R	W	D	L	L	D	V	M	R	A	C	Y	A	L	R	P	E	G	I	N	W	P	E	N	D	D	G	L	P	S	F	R	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	H	S	L	F	T	V	P	K	T	C	I	L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	P	Y	A	W	S	W	Q	H	D	N	S	R	W	D	L	L	D	V	M	R	A	C	Y	A	L	R	P	E	G	I	N	W	P	E	N	D	D	G	L	P	S	F	R	L	E
Template Known Secondary structure							T	S	T	T						S	S	T	T	T	T												T	T	S		S	S	G	G	G	T	G	G	G																			T	T	S				B		T	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	T	K	A	N	G	I	E	H	S	N	A	H	D	V	M	A	D	V	Y	A	T	I	A	M	A	K	L	V	K	T	R	Q	P	R	L	F	D	Y	L	F	T	H	R	N	K	H	K	L	M	A	L	I	D	V	P	Q	M	K	P	L	V	H	V	S	G	M	F	G	A	W	R	G	N	T	S	W	V	A
Query Conservation
Alig confidence											.	.	.
Template Conservation											.	.	.
Template Sequence		H	L	T	K	A	N	G	I	E	.	.	.	H	S	D	A	M	A	D	V	Y	A	T	I	A	M	A	K	L	V	K	T	R	Q	P	R	L	F	D	Y	L	F	T	H	R	N	K	H	K	L	M	A	L	I	D	V	P	Q	M	K	P	L	V	H	V	S	G	M	F	G	A	W	R	G	N	T	S	W	V	A
Template Known Secondary structure							T	T			.	.	.				T	T																	S										T	T	S							T			T	T	T	T								G	G	G		G	G	G	T	T
Template Predicted Secondary structure											.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	W	H	P	E	N	R	N	A	V	I	M	V	D	L	A	G	D	I	S	P	L	L	E	L	D	S	D	T	L	R	E	R	L	Y	T	A	K	T	D	L	G	D	N	A	A	V	P	V	K	L	V	H	I	N	K	C	P	V	L	A	Q	A	N	T	L	R	P	E	D	A	D	R	L	G	I	N	R
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	A	W	H	P	E	N	R	N	A	V	I	M	V	D	L	A	G	D	I	S	P	L	L	E	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	P	V	K	L	V	H	I	N	K	C	P	V	L	A	Q	A	N	T	L	R	P	E	D	A	D	R	L	G	I	N	R
Template Known Secondary structure							S	S		T	T							T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S							G	G	G	S									T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.																				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	C	L	D	N	L	K	I	L	R	E	N	P	Q	V	R	E	K	V	V	A	I	F	A	E	A	E	P	F	T	P	S	D	N	V	D	A	Q	L	Y	N	G	F	F	S	D	A	D	R	A	A	M	K	I	V	L	E	T	E	P	R	N	L	P	A	L	D	I	T	F	V	D	K	R	I	E	K	L	L
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	H	C	L	D	N	L	K	I	L	R	E	N	P	Q	V	R	E	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	V	D	A	Q	L	Y	N	G	F	F	S	D	A	D	R	A	A	M	K	I	V	L	E	T	E	P	R	N	L	P	A	L	D	I	T	F	V	D	K	R	I	E	K	L	L
Template Known Secondary structure															T	T						.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G		G	G	G																	S		T	T	T	S	T	T							S	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.														.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	Y	R	A	R	N	F	P	G	T	L	D	Y	A	E	Q	Q	R	W	L	E	H	R	R	Q	V	F	T	P	E	F	L	Q	G	Y	A	D	E	L	Q	M	L	V	Q	Q	Y	A	D	D	K	E	K	V	A	L	L	K	A	L	W	Q	Y	A	E	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	N	Y	R	A	R	N	F	P	G	T	L	D	Y	A	E	Q	Q	R	W	L	E	H	R	R	Q	V	F	T	P	E	F	L	Q	G	Y	A	D	E	L	Q	M	L	V	Q	Q	Y	A	D	D	K	E	K	V	A	L	L	K	A	L	W	Q	Y	A	D	E	I
Template Known Secondary structure										G	G	G																	S																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.