Job Description Q2A0L0 Confidence 98.09% Date Thu Jan 5 12:33:38 GMT 2012 Rank 43 Aligned Residues 183 % Identity 13% Template c2dtuA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog Resolution 2.37 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.
Query Sequence		M	N	D	G	K	Q	Q	S	T	F	L	F	H	D	Y	E	T	F	G	T	H	P	.	.	.	.	.	.	A	L	D	R	P	A	Q	F	A	A	I	R	T	D	S	E	F	N	V	I	G	E	P	E	V	F	Y	C	K	P	A	D	D	Y	L	P	Q	P	G	A	V	L	I	T	G	I	T	P	Q	E	A	R
Query Conservation																								.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.																					.	.	.									.
Template Conservation																																																		.	.	.									.
Template Sequence		I	K	Y	D	H	T	K	I	R	V	A	N	F	D	I	E	V	T	S	P	D	G	F	P	E	P	S	Q	A	K	H	P	I	D	A	I	T	H	Y	D	S	I	D	D	R	F	Y	V	.	.	.	F	D	L	L	N	S	P	Y	.	G	N	V	E	E	W	S	I	E	I	A	A	K	L	Q	E	Q	G	G	D
Template Known Secondary structure						G	G	G	S												S	S	S	S			T	T	T			S										T	T	T	T					.	.	.							T	T	.													S		G	G	G	T
Template Predicted Secondary structure																																																		.	.	.									.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		76	.	.	.													80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.																		.																																										.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.																		.																																										.	.	.	.	.
Query Sequence		A	K	G	E	.	.	.	.	.	.	.	.	.	.	.	.	N	E	A	A	F	A	A	R	I	H	S	L	F	T	V	P	K	.	T	C	I	L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	P	Y	A	W	S	W	Q	H	D	N	S	R	W	D	L	.	.	.	.	.
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.																		.																																										.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.																		.																																										.	.	.	.	.
Template Conservation
Template Sequence		E	V	P	S	E	I	I	D	K	I	I	Y	M	P	F	D	N	E	K	E	L	L	M	E	Y	L	N	F	W	Q	Q	K	T	P	V	I	L	T	G	W	N	V	E	S	F	A	I	P	Y	V	Y	N	R	I	K	N	I	F	G	E	S	T	A	K	R	L	S	P	H	R	K	T	R	V	K	V	G	E	I	I
Template Known Secondary structure					T	T	T	G	G	G							S	S															T			S					S	S	T	T	T	T													S						G	G	G	S	T	T	S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
									138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.																	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	L	D	V	M	R	A	C	Y	A	L	R	P	E	G	I	N	W	P	E	N	D	D	G	L	P	S	F	R	L	E	H	L	T	K	A	.	N	G	I	E	H	S	N	A	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	M	A	D	V	Y	A	T	I	A	M
Query Conservation		.	.	.	.	.	.	.																																				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		T	L	F	G	I	S	V	L	D	Y	I	D	L	Y	K	K	F	S	F	T	.	.	.	.	.	.	.	.	.	N	Q	P	S	Y	S	L	D	Y	I	S	E	F	E	L	N	V	G	K	L	K	Y	D	G	P	I	S	K	L	R	E	S	N	H	Q	R	Y	I	S	Y	N	I	I	A	V	Y	R	V	L	Q	I
Template Known Secondary structure				T	T														S			.	.	.	.	.	.	.	.	.			S													S			S				S	S		G	G	G
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.										.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		194	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	K	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions