Return to main results Retrieve Phyre Job Id

Job DescriptionP39363
Confidence99.95%DateThu Jan 5 11:59:54 GMT 2012
Rank10Aligned Residues138
% Identity14%Templatec2a0jA_
PDB info PDB header:transferaseChain: A: PDB Molecule:pts system, nitrogen regulatory iia protein; PDBTitle: crystal structure of nitrogen regulatory protein iia-ntr from2 neisseria meningitidis
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30....... ..40.........50.........60.........70.........80
Predicted Secondary structure 













.















Query SS confidence 



































.










































Query Sequence  INDIKWVQAQRKATDWRQAVEIATRPLVAYGAAQPC. YVNGIIENTLNWGPYYLIAPGIALPHARPEQGANYNQVSITTL
Query Conservation    
 
 
 
        
 
      
     
   .
   
  

    
   

 





      
    
 
  
Alig confidence 



































.













..











.













Template Conservation   
    
       
    
  
   
     
        
  

    
.. 
   




  .   
    
 
  
Template Sequence  ILPLSHIVLDMEVGSKKRLFEEAGLLLERESSLSHADVFECLFAREKLGST. . GLGQGVAIPHGR. HAGVKQATGAFIRT
Template Known Secondary structure 

GGG



SSTTSS
TTS

..B
SSS

.TT

S
Template Predicted Secondary structure 
















..


.






Template SS confidence 















































































   7..10.........20.........30.........40.........50....... ..60......... 70.........80...
 
   81........90.........100. ........110.........120.........130.........140..
Predicted Secondary structure 








..









Query SS confidence 




















. .








































Query Sequence  RTPVAFGNEECDPVWLLLCVS. . ATDANAHILTIQRISQFIDSPQRLTAVGNASTDDALFALVS
Query Conservation 
 

         
  
  
 ..       
  
  
            
  
    
   

 
Alig confidence 




















..








































Template Conservation    

     
   
  



  
       
  
  
   
        
       
    

Template Sequence  REPVGFDAPDGKPVSLIFILLVPENATGEHLEVLSKLAGKFSQKSIRESLMTVSSAEEVRAILT
Template Known Secondary structure 



TTS

SS
T


S
Template Predicted Secondary structure 





















Template SS confidence 































































   84.....90.........100.........110.........120.........130.........140.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions