Return to main results Retrieve Phyre Job Id

Job DescriptionP75779
Confidence98.55%DateThu Jan 5 12:14:02 GMT 2012
Rank13Aligned Residues169
% Identity14%Templatec2opwA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo)
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20... ......30........
Predicted Secondary structure 




...........................................














Query SS confidence 





















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .














Query Sequence  MYHIPGVLSPQDVARFREQLEQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AEWVDGRVTTGAQGA
Query Conservation 
  
 



 


  

   
 ...........................................    

  
 
    
Alig confidence 





















...........................................














Template Conservation 



   
  
    
                                                                
Template Sequence  FLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPP
Template Known Secondary structure  TTSS
T



GGGSS


STTTTS
TTSB
TTS
BSS
G
Template Predicted Secondary structure 


























































Template SS confidence 















































































   17..20.........30.........40.........50.........60.........70.........80.........90......
 
   3940.........50.........60.........70.........80.........90... ......100.........110......
Predicted Secondary structure 






















..















Query SS confidence 






















































. .






















Query Sequence  QVKNNQQVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETY. . GFHVDGAVRSHPQNGWMRTDLSA
Query Conservation    
 
  
         
   
   
               
     

  
  
..  
 
            
   
 
Alig confidence 






















































..
















...


Template Conservation                      
     
      
 
              
       

 
            ...
  
Template Sequence  EKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRV. . . LGV
Template Known Secondary structure  GGS

T
T
SS


TTTB


GGGTS
SSS
...
Template Predicted Secondary structure 




































...
Template SS confidence 















































































   97..100.........110.........120.........130.........140.........150.........160.........170 ...
 
   117..120.........130......... 140.........150.........160.. ......
Predicted Secondary structure 












...........................








.


Query SS confidence 






















. . . . . . . . . . . . . . . . . . . . . . . . . . .






















.





Query Sequence  TLFLSDPQSYDGGELVVNDTFGQ. . . . . . . . . . . . . . . . . . . . . . . . . . . HRVKLPAGDLVLYPSSSLHCVTP. VTRGVR
Query Conservation 
  
       

          ...........................  
 
  
  
 
 
  

 
 
.

 
 
Alig confidence 






















...........................






















.





Template Conservation   
 
 
     
 
  




                             
      




    
 
 
  
 
   
Template Sequence  WIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRSR
Template Known Secondary structure  SS
B
TTTT
TT
SSS

S









GGG

B
TT
TT


B
SSS

Template Predicted Secondary structure 

























































Template SS confidence 















































































   174.....180.........190.........200.........210.........220.........230.........240.........250...
 
   169170...
Predicted Secondary structure 
Query SS confidence 




Query Sequence  VASFM
Query Conservation       
Alig confidence 




Template Conservation   
   
Template Sequence  QAYTF
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 




   258.260..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions