Return to main results Retrieve Phyre Job Id

Job DescriptionP11875
Confidence100.00%DateThu Jan 5 11:32:57 GMT 2012
Rank6Aligned Residues330
% Identity25%Templated1iq0a2
SCOP infoAdenine nucleotide alpha hydrolase-like Nucleotidylyl transferase Class I aminoacyl-tRNA synthetases (RS), catalytic domain
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   109110.........120.........130.........140.........150.........160.........170....... ..180.......
Predicted Secondary structure 





























.




Query SS confidence 




































































.









Query Sequence  TPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQ. QENAGEMELA
Query Conservation        
 

  











 
 

 

 


 

  
  
     


 
 

   
       . 
        
Alig confidence 




































































.









Template Conservation        
 
  






 






  
  
 


 

  
  
      

 
  
                      
Template Sequence  PRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH
Template Known Secondary structure 






TTS

BTT
TTSTT



SSS
Template Predicted Secondary structure 

































Template SS confidence 















































































   99100.........110.........120.........130.........140.........150.........160.........170........
 
   188.190.........200.........210.........220.........230.........240.........250.........260.......
Predicted Secondary structure 













Query SS confidence 















































































Query Sequence  DLEGFYRDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPG
Query Conservation       
                       

                             
         
         
Alig confidence 










.





















......







































Template Conservation       
     .                  
   ......                       
    
           
Template Sequence  FAGRAYVRLHQ. DPEYERLQPAIEEVLHALERGE. . . . . . LREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQK
Template Known Secondary structure  .
TTTGGGTTT......TTT


STT
Template Predicted Secondary structure 
.



......











Template SS confidence 















































































   179180......... 190.........200.........210. ........220.........230.........240.........250.
 
   268.270.........280... ......290.........300.........310.........320........
Predicted Secondary structure 






.....


























..............
Query SS confidence 















. . . . .












































. . . . . . . . . . . . . .
Query Sequence  IVADLKAKGLAVESEG. . . . . ATVVFLDEFKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRYETL. . . . . . . . . . . . . .
Query Conservation      
         

.....
                
 

 



   
   


    
    ..............
Alig confidence 















.....







.



































..............
Template Conservation          
                    .          

 
 

   
   
      
                  
Template Sequence  ALALLEQSPHVFRPREGKYAGALVMDASP. VIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYP
Template Known Secondary structure  TTSTT

SSSTTTT

TT.TS
S
S


TTS
B
TTSS





SS
T
Template Predicted Secondary structure 














.

































Template SS confidence 















































































   252.......260.........270.........280 .........290.........300.........310.........320.........330
 
   329330.........340.........350.........360.........370.........380.........390....
Predicted Secondary structure  ..............






























Query SS confidence  . . . . . . . . . . . . . .

































































Query Sequence  . . . . . . . . . . . . . . HADRVLYYIDSRQHQHLMQAWAIVRKAGYVPESVPLEHHMFGMMLGKDGKPFKTRAGGTVKLADLL
Query Conservation  ..............  
  
 
 
 
           
  

         
     
   

 




 

 
 
 


Alig confidence  ..............











































.....
















Template Conservation                  
  


       
   
       
         
     
.....               

Template Sequence  GLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETV. . . . . LLEGRQMSGAVSVDEVL
Template Known Secondary structure  T





SSSS


TT
TT

.....TTB
S



B
Template Predicted Secondary structure 




























.....








Template SS confidence 















































































   331........340.........350.........360.........370.........380........ .390.........400.....
 
   395....400.........410.........420.........430.........440.........450...
Predicted Secondary structure 


















Query SS confidence 


























































Query Sequence  DEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFE
Query Conservation   
                           

 




  
         

        
Alig confidence 
















..







































Template Conservation           
 


 
 ..             




 

         

      
 
Template Sequence  EEATRRARAIVEEKNPD. . HPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFE
Template Known Secondary structure 
TT..
S
S
TTS




Template Predicted Secondary structure 


..

















Template SS confidence 


























































   410.........420...... ...430.........440.........450.........460......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions