Return to main results Retrieve Phyre Job Id

Job DescriptionP11875
Confidence100.00%DateThu Jan 5 11:32:57 GMT 2012
Rank21Aligned Residues279
% Identity19%Templated1ffya3
SCOP infoAdenine nucleotide alpha hydrolase-like Nucleotidylyl transferase Class I aminoacyl-tRNA synthetases (RS), catalytic domain
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   109110.........120.........130.........140.........150.........160.........170.........180........
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  TPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMELAD
Query Conservation        
 

  











 
 

 

 


 

  
  
     


 
 

   
        
         
Alig confidence 








































































.......
Template Conservation        
     

  

 




       


 
  
  
  
    
 
  
 

   
           .......
Template Sequence  NKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMS. . . . . . .
Template Known Secondary structure  TTTS
B





BSSS


TTT
B




B

ST

STTT
.......
Template Predicted Secondary structure 

































.......
Template SS confidence 















































































   44.....50.........60.........70.........80.........90.........100.........110......
 
   189190.........200.........210.........220.........230.........240.........250. ........260......
Predicted Secondary structure 













..
Query SS confidence 






























































. .














Query Sequence  LEGFYRDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLT. . RDDVMGESLYNPMLP
Query Conservation      
                       

                             
   ..      
        
Alig confidence  ................................






























..














Template Conservation  ................................                         


  
      
        
 
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQI
Template Known Secondary structure  ................................TTT

S
TTS
TTS
Template Predicted Secondary structure  ................................














Template SS confidence 















































































   117..120.........130.........140.........150.........160....
 
   267..270.........280.........290.
Predicted Secondary structure 










.......................................................
Query SS confidence 
























. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  GIVADLKAKGLAVESEGATVVFLDE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation       
         


       .......................................................
Alig confidence 
























.......................................................
Template Conservation    
  
   
 

             
 


                     


                    
    
Template Sequence  RIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGK
Template Known Secondary structure  TT
TTTT

GGG

TTT

B

TSSS
Template Predicted Secondary structure 








































Template SS confidence 















































































   165....170.........180.........190.........200.........210.........220.........230.........240....
 
   292.......300...
Predicted Secondary structure  ....................................................................









Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .











Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FKNKEGEPMGVI
Query Conservation  ....................................................................         
 
Alig confidence  ....................................................................











Template Conservation                


   

 


    
                                                 
Template Sequence  TRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTF
Template Known Secondary structure 



S
SSS
B



TTS



TS
SSTT


SS
TTS

Template Predicted Secondary structure 
















































Template SS confidence 















































































   439440.........450.........460.........470.........480.........490.........500.........510........
 
   304.....310.........320...... ...330.........340.. .......350.........360.........370.........380
Predicted Secondary structure 











..








.
















Query SS confidence 






















. .















.





































Query Sequence  IQKKDGGYLYTTTDIACAKYRYE. . TLHADRVLYYIDSRQH. QHLMQAWAIVRKAGYVPESVPLEHHMFGMMLGKDGKPF
Query Conservation 
 



   
   


    
  ..    
  
 
 
 
  .         
  

         
     
   

 

Alig confidence 






















..















.


























..








Template Conservation      
  
 
  
                
 

   
 
               
    
   
   
 ..

   
 

Template Sequence  TKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGF. . VMDGEGKKM
Template Known Secondary structure 



TTTTTSTT

SSBSGGGGTTSS
SBS

..
TTS


Template Predicted Secondary structure 





















..






Template SS confidence 















































































   519520.........530.........540.........550.........560.........570.........580....... ..590......
 
   381........390.........400.........410.........420.........430.........440.........450.....
Predicted Secondary structure 
























Query SS confidence 










































































Query Sequence  KTRAGGTVKLADLLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGN
Query Conservation 


 

 
 
 


 
                           

 




  
         

         
Alig confidence 















...........................































Template Conservation 


 

 
    

  ...........................



 

  
       
  

   
      
Template Sequence  SKSLGNVIVPDQVVKQ. . . . . . . . . . . . . . . . . . . . . . . . . . . KGADIARLWVSSTDYLADVRISDEILKQTSDD
Template Known Secondary structure 
SSSS



...........................T
TS
TTS



Template Predicted Secondary structure 








...........................













Template SS confidence 










































































   597..600.........610.. .......620.........630.........640....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions