Job Description P11875 Confidence 100.00% Date Thu Jan 5 11:32:57 GMT 2012 Rank 4 Aligned Residues 444 % Identity 24% Template c3fnrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of putative arginyl t-rna synthetase from2 campylobacter jejuni; Resolution 2.20 Å

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		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		L	D	P	A	F	L	A	E	H	V	Q	Q	A	L	A	S	.	D	R	L	G	V	A	T	P	E	K	Q	T	I	V	V	D	Y	S	A	P	N	V	A	K	E	M	H	V	G	H	L	R	S	T	I	I	G	D	A	A	V	R	T	L	E	F	L	G	H	K	V	I	R	A	N	H	V	G	D	W	G	T	Q
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		L	S	K	T	F	L	N	E	L	A	N	Q	A	L	T	N	P	N	D	F	T	K	G	E	K	K	Q	E	S	F	L	L	E	Y	V	S	A	N	P	T	G	P	L	H	I	G	H	A	R	G	A	V	F	G	D	T	L	T	R	L	A	R	H	L	G	Y	K	F	N	T	E	Y	Y	V	N	D	A	G	N	Q
Template Known Secondary structure																	S	G	G	G	T	T						S												S	S	S	S		B	G	G	G																	T	T
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		F	G	M	L	I	A	W	L	E	K	Q	Q	Q	E	N	A	G	E	M	E	L	A	D	L	E	G	F	Y	R	D	A	K	K	H	Y	D	E	D	E	E	F	A	E	R	A	R	N	Y	V	V	K	L	Q	S	.	.	.	G	D	E	Y	F	R	E	M	W	R	K	L	V	D	I	T	M	T	Q	N	Q	I	T
Query Conservation																																																								.	.	.
Alig confidence																										.	.	.	.	.	.	.	.																							.	.	.
Template Conservation																										.	.	.	.	.	.	.	.
Template Sequence		I	Y	L	L	G	L	S	I	L	L	S	V	K	E	S	I	L	H	E	N	V	E	Y	P	.	.	.	.	.	.	.	.	E	Q	Y	Y	K	G	E	Y	I	V	D	L	A	K	E	A	F	E	K	F	G	K	E	F	F	S	E	E	N	I	P	S	L	A	D	W	A	K	D	K	M	L	V	L	I	K	Q	N
Template Known Secondary structure																	T	S								.	.	.	.	.	.	.	.	S	S				S																G	G	G		S	G	G	G
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180									.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	R	L	N	V	T	L	T	R	D	D	V	M	G	E	S	L	Y	N	P	M	L	P	G	I	V	A	D	L	K	A	K	G	L	A	V	E	S	E	G	A	T	V	V	F	L	D	E	F	K	N	K	E	G	E	P	M	G	V	I	I	Q	K	K	D	G	G	Y	L	Y	T	T	T	D	I	A	C	A	K
Query Conservation
Alig confidence										.	.																																									.	.	.	.
Template Conservation										.	.																																									.	.	.	.
Template Sequence		L	E	Q	A	K	I	K	I	.	.	D	S	Y	V	S	E	R	S	Y	Y	D	A	L	N	A	T	L	E	S	L	K	E	H	K	G	I	Y	E	Q	E	G	K	I	W	L	A	S	S	Q	K	.	.	.	.	G	D	E	K	D	R	V	I	I	R	E	D	G	R	G	T	Y	L	A	A	D	I	V	Y	H	K
Template Known Secondary structure					T	T				.	.	S					G	G	G	G	S	T	T											T	T						T	T						G	G	G	G	.	.	.	.	T		S	S							T	T	S		B
Template Predicted Secondary structure										.	.																																									.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.					.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	Y	E	T	L	H	A	D	R	V	L	Y	Y	I	D	S	R	Q	H	Q	H	L	M	Q	A	W	A	I	V	R	K	A	G	Y	V	P	E	S	V	P	L	E	H	H	M	F	G	M	M	L	G	K	D	G	K	P	F	K	T	R	A	G	G	T	V	K	L	A	D	L	L	D	E	A	L	E	R	A	R
Query Conservation
Alig confidence							.																																		.	.																																		.	.	.	.	.	.
Template Conservation							.																																		.	.																																		.	.	.	.	.	.
Template Sequence		D	K	M	S	R	.	G	Y	G	K	C	I	N	I	W	G	A	D	H	H	G	Y	I	P	R	M	K	A	A	M	E	F	L	G	F	D	S	N	N	.	.	L	E	I	I	L	A	Q	M	V	S	L	L	K	D	G	E	P	Y	K	M	A	G	N	F	I	L	M	S	D	V	V	D	E	.	.	.	.	.	.
Template Known Secondary structure					T	S	.	S		S								G	G	G	G	G	G										T	T	T			G	G	G	.	.														T	T								S	S		B								.	.	.	.	.	.
Template Predicted Secondary structure							.																																		.	.																																		.	.	.	.	.	.
Template SS confidence
		303	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.		.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		R	L	V	A	E	K	N	P	D	M	P	A	D	E	L	E	K	L	A	N	A	V	G	I	G	A	V	K	Y	A	D	L	S	K	N	R	T	T	D	Y	I	F	D	W	D	N	M	L	A	F	.	E	G	N	T	A	P	Y	M	Q	Y	A	Y	T	R	V	L	S	V	F	R	K	A	E	I	D	E	E	Q	L
Query Conservation																																																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	S	D	A	L	R	Y	I	F	L	S	K	K	C	D	T	H	L	E	F	D	I	S	D	L	Q	K	E	D	S	S	N	P	V	Y	Y	I	N	Y	A	H	A	R	I	H	Q	V	F	A	K	A	G	K	K	I	D	D	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	S	S		T	T	S						G	G	G	G	G			S	T	T	S																			T	T			T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																							377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	A	P	V	I	I	R	E	D	R	E	A	Q	L	A	A	R	L	L	Q	F	E	E	T	L	T	V	V	A	R	E	G	T	P	H	V	M	C	A	Y	L	Y	D	L	A	G	L	F	S	G	F	Y	E	H	C	P	I	L	S	A	E	N	E	E	V	R	N	S	R	L	K	L	A	Q	L	T	A	K	T
Query Conservation
Alig confidence																																																																			.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		M	K	A	D	L	Q	S	L	N	Q	D	G	V	N	L	L	F	E	A	L	N	L	K	A	V	L	N	D	A	F	E	A	R	A	L	Q	K	I	P	D	Y	L	K	N	L	A	A	N	F	H	K	F	Y	N	E	N	K	V	V	G	S	A	N	E	N	.	.	.	D	L	L	K	L	F	S	L	V	A	L	S
Template Known Secondary structure		T	T				T	T														T												T		T	T																							T	T	S	T	T			.	.	.
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500				.	.	.	.	.	.	.	.	.	510	.	.
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	L	G	L	D	T	L	G	I	E	T	V	E	R	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	T	A	F	S	L	M	G	I	E	A	K	N	K	M
Template Known Secondary structure									T	T					S
Template Predicted Secondary structure
Template SS confidence
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.