Job Description P11875 Confidence 99.45% Date Thu Jan 5 11:32:57 GMT 2012 Rank 49 Aligned Residues 269 % Identity 15% Template c3aiiA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase; PDBTitle: archaeal non-discriminating glutamyl-trna synthetase from2 methanothermobacter thermautotrophicus Resolution 1.65 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	E	K	Q	T	I	V	V	D	Y	S	A	P	N	V	A	K	E	M	H	V	G	H	L	R	S	T	I	I	G	D	A	A	V	R	T	L	E	F	L	G	H	K	V	I	R	A	N	H	V	G	D	W	G	T	Q	F	G	M	L	I	A	W	L	E	K	Q	Q	Q	E	N	A	G	E	M	E	L	A	D
Query Conservation
Alig confidence													.																									.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																									.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	V	K	G	E	V	V	L	R	F	.	A	P	N	P	S	G	P	L	H	I	G	H	A	R	A	A	I	L	N	H	E	Y	A	R	.	.	K	Y	D	G	R	L	I	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	D	T	D	P	R	R	V	D	P	E	A	Y	D	M
Template Known Secondary structure		S	S			S							.				S	S	S	S		B																.	.		T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G			T	T
Template Predicted Secondary structure													.																									.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.																		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		189	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		L	E	G	F	Y	R	D	A	K	K	H	Y	D	E	.	.	.	D	E	E	F	A	E	R	A	R	N	Y	V	V	K	L	Q	S	G	D	E	Y	F	R	E	M	W	R	K	L	V	D	I	T	M	T	Q	N	Q	I	T	Y	D	R	L	N	V	T	L	T	R	D	D	V	M	G	E	S	L	Y	N	P	M	L
Query Conservation																.	.	.
Alig confidence																.	.	.																								.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Sequence		I	P	A	D	L	E	W	L	G	V	E	W	D	E	T	V	I	Q	S	D	R	M	E	T	Y	Y	E	Y	T	E	K	L	I	E	R	G	G	A	Y	V	.	.	.	.	.	.	C	T	C	R	P	E	E	F	R	E	L	K	N	R	G	E	A	C	H	.	.	.	.	.	.	.	.	.	C	R	S	L	G	F
Template Known Secondary structure										T				S					G	G	G	G														T	T	S				.	.	.	.	.	.			S											T	T				G	.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																																										.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190							.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.										210	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.												.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	I	V	A	D	L	K	A	K	G	L	A	V	E	S	E	G	A	T	V	V	F	L	D	E	F	K	N	K	E	G	E	P	M	G	V	I	I	Q	.	.	.	.	.	.	.	.	.	.	.	K	K	D	G	G	Y	L	Y	T	T	T	D	I	A	C	A	K	Y	R	Y	E	T	L	H	A	D	R	V	L
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		R	E	N	L	Q	R	W	R	E	M	F	E	M	K	E	G	S	A	V	V	R	V	K	T	D	L	N	H	P	N	P	A	I	R	D	W	V	S	M	R	I	V	E	A	E	H	P	R	T	G	T	R	Y	R	V	Y	P	M	M	N	F	S	V	A	V	D	D	H	L	.	.	.	.	L	G	V	T	H	V	L
Template Known Secondary structure											G	G	G	S		T	T	S									T	T		S	S	G	G	G	T	T									S		B	T	T	T	B	T	S																		.	.	.	.	T	T
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.					.	.	.	.	.	290	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.									.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.
Query Sequence		Y	Y	I	D	S	R	Q	H	Q	H	L	M	Q	A	W	A	I	V	R	K	A	G	Y	V	P	E	S	V	P	L	E	H	H	M	F	G	M	M	L	G	K	D	G	K	P	F	K	T	R	A	G	G	T	V	.	.	.	.	.	.	.	.	K	L	A	D	L	L	D	E	A	L	E	R	A	R	R	L	V	A
Query Conservation																																																								.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.																	.	.									.	.	.																		.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.																	.	.									.	.	.																																			.	.	.	.	.	.	.	.	.
Template Sequence		R	.	.	.	.	.	.	.	A	N	R	E	K	Q	E	Y	L	Y	R	H	L	G	W	E	.	.	P	P	E	F	I	H	Y	G	.	.	.	R	L	K	T	S	G	A	R	E	G	I	L	R	G	E	Y	S	G	W	D	D	P	R	L	G	T	L	R	A	I	A	R	R	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.	.	.	.	.	.	.														T			.	.									.	.	.		B												S	S			S	T	T		T	T	S		B							T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.																	.	.									.	.	.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		292								.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.				.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		E	K	N	P	D	M	P	A	D	E	L	E	K	L	A	N	A	V	G	I	G	A	V	K	Y	A	D	L	S	K	N	R	.	T	T	D	Y	I	F	D	W	D	N	M	L	A	F	E	G
Query Conservation																																		.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	P	E	A	I	R	K	L	M	V	E	I	G	V	K	I	A	D	S	T	M	S	W	K	K	I	Y	G	L	N	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T		S	S		B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions