Phyre 2 alignment of P11875 with c3a05A

Job Description P11875
Confidence 98.11% Date Thu Jan 5 11:32:57 GMT 2012

Rank 54 Aligned Residues 240

% Identity 18% Template c3a05A_

PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 hyperthermophilic archaeon, aeropyrum pernix k1 complex3 with tryptophan

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	S	A	P	N	V	A	K	E	M	H	V	G	H	L	R	S	T	I	I	G	D	A	A	V	R	T	L	E	F	L	G	H	K	V	I	R	A	N	H	V	G	D	W	G	T	Q	F	G	M	L	I	A	W	L	E	K	Q	Q	Q	E	N	A	G	E	M	E	L	A	D	L	E	G	F	Y	R	D	A	K	K
Query Conservation
Alig confidence																					.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	T	G	F	M	P	S	G	K	F	H	F	G	H	K	L	T	V	D	Q	.	.	.	.	L	I	Y	L	Q	K	N	G	F	K	V	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	A	D	A	E	A	F	A	V	R
Template Known Secondary structure								S			B										.	.	.	.							T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure																					.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.																																	.	.	.	110	.	.	.	.	.	.	.

	199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	H	Y	D	E	D	E	E	F	A	E	R	A	R	N	Y	V	V	K	L	Q	S	G	D	E	Y	F	R	E	M	W	R	K	L	V	D	I	T	M	T	Q	N	Q	I	T	Y	D	R	L	N	V	T	L	T	R	D	D	V	M	G	E	S	L	Y	N	P	M	L	P	G	I	V	A	D	L	K	A	K	G	L	A
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template Sequence	R	I	G	R	E	E	A	V	R	I	A	V	E	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	N	M	I	A	L	G	L	D	P	K	D	T	E	F	Y	F	Q	T	N	R	G	T	P	Y	F	R	L	I	Q	L	F	S	G	K	.	.	.
Template Known Secondary structure														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T			T	T	T						G	G	G	S												T	T	S	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template SS confidence
	118	.	120	.	.	.	.	.	.	.	.	.	130	.	.																											.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.

	279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.				.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence	V	E	S	E	G	A	T	V	V	F	L	D	E	F	K	N	K	E	G	E	P	M	G	V	I	I	Q	K	K	D	G	G	Y	L	Y	T	T	.	.	.	T	D	I	A	C	A	K	Y	R	Y	E	T	L	H	A	D	R	V	L	Y	Y	I	D	S	R	Q	H	Q	H	L	M	Q	A	W	A	I	V	R	K	A
Query Conservation																																						.	.	.
Alig confidence	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.										.	.	.													.
Template Conservation	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.																									.
Template Sequence	.	.	.	.	.	.	.	.	V	T	A	A	E	M	E	A	I	Y	G	E	L	.	.	.	.	.	.	.	T	P	A	K	M	M	A	S	L	T	Q	A	A	D	I	L	H	V	Q	L	D	E	Y	G	.	G	Y	R	H	V	V	V	P	V	G	A	D	Q	D	P	H	L	R	L	T	R	D	L	A	D	R	M
Template Known Secondary structure	.	.	.	.	.	.	.	.	S										S	S		.	.	.	.	.	.	.																	G	G	G	S	G	G	G	T	.											G	G	G														T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.																									.
Template SS confidence
									169	170	.	.	.	.	.	.	.	.	.	180	.								.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

	356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence	G	Y	V	P	E	S	V	P	L	E	H	H	M	F	G	M	M	L	G	K	D	G	K	P	F	K	T	R	A	G	G	.	T	V	K	L	A	D	L	L	D	E	A	L	E	R	A	R	R	L	V	A	E	K	N	P	D	M	P	A	D	E	L	E	K	L	A	N	A	V	G	I	G	A	V	K	Y	A	D	L
Query Conservation																																.
Alig confidence																																.																		.	.
Template Conservation																																																		.	.
Template Sequence	A	G	V	V	E	L	E	R	P	A	S	T	Y	H	K	L	Q	P	G	L	D	G	R	K	M	S	S	S	R	P	D	S	T	I	F	L	T	D	P	P	E	V	A	R	N	K	L	F	R	.	.	A	L	T	G	G	R	A	T	A	E	E	Q	R	R	L	G	G	V	P	E	V	C	S	V	Y	H	M	D	L
Template Known Secondary structure	T	T	T	S														B		T	T	S	S	B			T	T	S	G	G	G	S		B	T	T												T	.	.				S			S	S											G	G	G
Template Predicted Secondary structure																																																		.	.
Template SS confidence
	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

	435	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	K	N	R	T	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Y	H	L	M	P	D	D
Template Known Secondary structure		T	T			S
Template Predicted Secondary structure
Template SS confidence
	311	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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