Job Description P11875 Confidence 97.70% Date Thu Jan 5 11:32:57 GMT 2012 Rank 60 Aligned Residues 204 % Identity 19% Template c2ts1A_ PDB info PDB header:ligase (synthetase) Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of tyrosyl-t/rna synthetase refined at 2.3 angstroms2 resolution. interaction of the enzyme with the tyrosyl adenylate3 intermediate Resolution 2.30 Å

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		119	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.						.	.	160	.												.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure											.																															.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																															.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	A	P	N	V	A	K	E	.	M	H	V	G	H	L	R	S	T	I	I	G	D	A	A	V	R	T	L	E	F	L	G	H	K	V	I	R	A	N	.	.	.	.	.	H	V	G	D	.	.	.	.	.	.	.	.	.	.	.	W	G	T	Q	F	G	M	L	I	A	W	L	E	K	Q	Q	Q	E	N	A
Query Conservation											.																															.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.											.	.	.	.																	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		Y	C	G	F	D	P	T	A	D	S	L	H	I	G	H	L	A	T	I	L	.	.	.	.	T	M	R	R	F	Q	Q	A	G	H	R	P	I	A	L	V	G	G	A	T	G	L	I	G	D	P	S	G	K	K	S	E	R	T	L	N	A	K	E	T	V	E	A	W	S	A	R	I	K	E	Q	L	G	R	F	L
Template Known Secondary structure								S	S	S	S		B	G	G	G						.	.	.	.								T	T									T	T	G	G	G	T				T	T		S	S																						T	T	S	S
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.					.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	M	E	L	A	D	L	E	G	F	Y	R	D	A	K	K	H	Y	D	E	D	E	E	F	A	E	R	A	R	N	Y	V	V	K	L	Q	S	G	D	E	Y	F	R	E	M	W	R	K	L	V	D	I	T	M	T	Q	N	Q	I	T	Y	D	R	L	N	V	T	L	T	R	D	D	V	M	G	E	S	L	Y
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	G	N	P	A	K	I	K	N	N	Y	D	W	I	G
Template Known Secondary structure			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S							T					T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.																																																														.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	M	L	P	G	I	V	A	D	L	K	A	K	G	L	A	V	E	S	E	G	A	T	V	V	F	L	D	E	F	K	N	K	E	G	E	P	M	G	V	I	I	Q	K	K	D	G	G	Y	L	Y	T	T	T	D	I	A	C	A	K	Y	R	Y	E	T	L	H	A	D	R	V	L	Y	Y	I	D	S	R	Q
Query Conservation
Alig confidence																						.	.	.	.	.																	.	.	.	.	.	.																								.	.
Template Conservation																						.	.	.	.	.																	.	.	.	.	.	.																								.	.
Template Sequence		P	L	D	V	I	T	F	L	R	D	V	G	K	H	F	S	V	N	Y	M	.	.	.	.	.	M	A	K	E	S	V	Q	S	R	I	E	T	G	I	S	F	.	.	.	.	.	.	T	E	F	S	Y	M	M	L	Q	A	Y	D	F	L	R	L	Y	E	T	E	G	C	R	.	.	L	Q	I	G	G	S	D	Q
Template Known Secondary structure		T										T	G	G	G							.	.	.	.	.		T	S					T	T	T	T	T					.	.	.	.	.	.																								.	.						G	G	G
Template Predicted Secondary structure																						.	.	.	.	.																	.	.	.	.	.	.																								.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.						.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	H	L	M	Q	A	W	A	I	V	R	K	A	G	Y	V	P	E	S	V	P	L	E	H	H	M	F	G	M	M	L	G	K	D	G	K	P	F	K	T	R	A	G	G	T	V	K	L	A	D	L	L	D	E	A	L	E	R	A	R	R	L	V
Query Conservation
Alig confidence																	.	.	.										.	.
Template Conservation																	.	.	.										.	.
Template Sequence		W	G	N	I	T	A	G	L	E	L	I	R	K	T	K	.	.	.	G	R	A	F	G	L	T	I	P	.	.	L	V	T	K	A	D	G	T	K	F	G	K	T	E	S	G	T	I	W	L	D	K	E	K	T	S	P	Y	E	F	Y	Q	F	W	I
Template Known Secondary structure																	.	.	.										.	.					T	T	S			T	T			S	S				B	S	S	T	T	T	S
Template Predicted Secondary structure																	.	.	.										.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions