Job Description P11875 Confidence 98.23% Date Thu Jan 5 11:32:57 GMT 2012 Rank 53 Aligned Residues 241 % Identity 14% Template c2rkjM_ PDB info PDB header:ligase/rna Chain: M: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: cocrystal structure of a tyrosyl-trna synthetase splicing2 factor with a group i intron rna Resolution 4.50 Å

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		119	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.						.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure											.																														.	.	.	.	.						.
Query SS confidence											.																														.	.	.	.	.						.
Query Sequence		Y	S	A	P	N	V	A	K	E	.	M	H	V	G	H	L	R	S	T	I	I	G	D	A	A	V	R	T	L	E	F	L	G	H	K	V	I	R	A	.	.	.	.	.	N	H	V	G	D	.	W	G	T	Q	F	G	M	L	I	A	W	L	E	K	Q	Q	Q	E	N	A	G	E	M	E	L	A	D	L	E	G
Query Conservation											.																														.	.	.	.	.						.
Alig confidence											.												.	.	.	.															.	.	.	.	.						.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	V	G	I	D	P	T	A	P	S	L	H	V	G	H	L	L	P	L	M	P	.	.	.	.	L	F	W	M	Y	L	E	G	Y	K	A	F	T	L	I	G	G	S	T	A	K	I	G	D	P	T	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	S	S	S		B	G	G	G							.	.	.	.								T									T	T	G	G	G	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		F	Y	R	D	A	K	K	H	Y	D	E	D	E	E	F	A	E	R	A	R	N	Y	V	V	K	L	Q	S	G	D	E	Y	F	R	E	M	W	R	K	L	V	D	I	T	M	T	Q	N	Q	I	T	Y	D	R	L	N	V	.	.	.	T	L	T	R	D	D	V	M	G	E	S	L	Y	N	P	M	L	P	G	I
Query Conservation																																																											.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	M	N	M	T	K	I	H	Y	Q	L	K	K	L	W	E	N	V	D	T	Q	M	R	A	R	G	Y	E	A	D	W	A	R	K	R	G	I	V	N	N	N	H	W	W	N	K	.	Q	P	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										T	T					S	S		B						T					T	T	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.
Template SS confidence
																															159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	D	L	K	A	K	G	L	A	V	E	S	E	G	A	T	V	V	F	L	D	E	F	K	N	K	E	G	E	P	M	G	V	I	I	Q	K	K	D	G	G	Y	L	Y	T	T	T	D	I	A	C	A	K	Y	R	Y	E	T	L	H	A	D	R	V	L	Y	Y	I	D	S	R	Q	H	Q	H	L	M	Q	A
Query Conservation
Alig confidence																																				.	.	.	.	.	.																								.	.
Template Conservation																																				.	.	.	.	.	.																								.	.
Template Sequence		L	E	V	L	R	R	V	G	H	A	L	R	I	G	P	M	L	S	R	D	T	V	K	N	K	M	T	Q	G	D	G	V	S	F	.	.	.	.	.	.	A	E	F	T	Y	P	I	M	Q	G	W	D	W	F	E	L	F	Y	Q	Q	G	V	Q	.	.	M	Q	I	G	G	S	D	Q	Y	G	N	I	I	S	G
Template Known Secondary structure								T	T	T	T			S					T										T	S	S					.	.	.	.	.	.																								.	.						G	G	G
Template Predicted Secondary structure																																				.	.	.	.	.	.																								.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.							.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		349	350	.	.	.	.	.	.	.	.	.	360	.														.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.											.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Query Sequence		W	A	I	V	R	K	A	G	Y	V	P	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	L	E	H	H	M	F	G	M	M	L	G	K	D	G	K	P	F	K	T	R	A	G	G	T	V	K	L	A	.	.	.	.	.	.	.	.	.	.	D	L	L	D	E	A	L	E	R	A	R	R	L	V
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	V	V	K	A	A	R	E	S	E	P	D	P	Q	E	R	K	Y	V	T	P	K	T	A	L	D	E	C	V	G	F	T	V	P	L	L	T	D	S	S	G	A	K	F	G	K	S	A	G	N	A	I	W	L	D	P	Y	Q	T	S	V	F	D	F	Y	G	Y	F	V	R	R	S	D	Q	E	V	E	N	L
Template Known Secondary structure											T											S			S	T	T												B		S	S	S	S	B	T	T			T	T				B	S		G	G	G	S												S
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	K	N	P	D	M	P	A	D	E	L	E	K	L	A	N	A	V	G	I	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	L	F	T	F	M	P	I	S	E	I	T	K	T	M	E	E	H	I	K	D	P
Template Known Secondary structure																					T	T		T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions