Job Description P11875 Confidence 99.88% Date Thu Jan 5 11:32:57 GMT 2012 Rank 41 Aligned Residues 272 % Identity 15% Template c2o5rA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase 1; PDBTitle: crystal structure of glutamyl-trna synthetase 1 (ec 6.1.1.17)2 (glutamate-trna ligase 1) (glurs 1) (tm1351) from thermotoga maritima3 at 2.5 a resolution Resolution 2.34 Å

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		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	V	A	K	E	M	H	V	G	H	L	R	S	T	I	I	G	D	A	A	V	R	T	L	E	F	L	G	H	K	V	I	R	A	N	H	V	G	D	W	G	T	Q	F	G	M	L	I	A	W	L	E	K	Q	Q	Q	E	N	A	G	E	M	E	L	A	D	L	E	G	F	Y	R	D	A	K	K	H	Y	D
Query Conservation
Alig confidence																									.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	P	T	G	F	L	H	V	G	G	A	R	T	A	L	F	N	F	L	F	A	R	.	.	.	.	.	K	E	K	G	K	F	I	L	R	I	E	D	T	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	S	E	R	E	Y	E	E	K	L	X	E	S	L	R	W	L	G	L	L	W	D
Template Known Secondary structure						S			B																.	.	.	.	.			T							B			S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	G	G	G														T				S
Template Predicted Secondary structure																									.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.															.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		202	.	.													.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	E	.	.	.	.	.	.	.	.	.	.	.	.	E	F	A	E	R	A	R	N	Y	V	V	K	L	Q	S	G	D	E	Y	F	R	E	M	W	R	K	L	V	D	I	T	M	T	Q	N	Q	I	T	Y	D	R	L	N	V	T	L	T	R	D	D	V	M	G	E	S	L	Y	N	P	M	L	P	G	I	V
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																																						.	.	.
Template Sequence		E	G	P	D	V	G	G	D	H	G	P	Y	R	Q	S	E	R	V	E	I	Y	R	E	H	A	E	R	L	V	K	E	G	K	A	Y	Y	.	.	.	V	Y	A	Y	P	E	E	I	E	E	X	R	E	K	L	L	S	E	G	K	A	P	H	Y	S	Q	E	X	F	E	K	F	D	T	P	E	R	R	R	E	Y
Template Known Secondary structure		B	B	T	T	T	B		T	T				B	G	G	G	G														T	T	S				.	.	.					S	T	T	T										T	T					B		G	G	G	G	T	T	T
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		A	D	L	K	A	K	G	L	A	V	E	S	E	G	A	T	V	V	F	L	D	E	F	K	N	K	E	.	.	.	.	.	G	E	P	M	G	V	I	I	Q	K	K	D	G	G	Y	L	Y	T	T	T	D	I	A	C	A	K	Y	R	Y	E	T	L	H	A	D	R	V	L	Y	Y	I	D	S	R	Q	H	Q	H
Query Conservation																													.	.	.	.	.
Alig confidence																													.	.	.	.	.																								.	.	.	.													.	.
Template Conservation																																																									.	.	.	.													.	.
Template Sequence		E	E	K	G	L	R	P	A	V	F	F	K	X	P	R	K	D	Y	V	L	N	D	V	V	K	G	E	V	V	F	K	T	G	A	I	G	D	F	V	I	X	R	S	N	G	L	P	T	Y	N	F	A	C	V	V	.	.	.	.	D	D	X	L	X	E	I	T	H	V	I	R	.	.	G	D	D	H	L	S	N
Template Known Secondary structure				T	T											S	S							T	T	T							T	T	S	S		B						T	T	S		B									.	.	.	.					T	T		S					.	.		G	G	G
Template Predicted Secondary structure																																																									.	.	.	.													.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	Q	A	W	A	I	V	R	K	A	G	Y	V	P	E	S	V	P	L	E	H	H	M	F	G	M	M	L	G	K	D	G	K	P	F	K	T	R	A	G	G	T	V	K	L	A	D	L	L	D	E	A	L	E	R	A	R	R	L	V	A	E	K	N	P	D	M	P	A	D	E	L	E	K	L	A	N	A	V
Query Conservation
Alig confidence																		.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	L	R	Q	L	A	L	Y	E	A	F	E	K	A	P	P	.	.	.	.	V	F	A	H	V	S	T	I	L	G	P	D	G	K	K	L	S	K	R	H	G	A	T	S	V	E	A	F	R	D	X	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y
Template Known Secondary structure												T	T					.	.	.	.											T	T	S	S	B			G	G	G	S			B								T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																												.
		425	.	.	.	.	430	.	.	.	.	.				.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		G	I	G	A	V	K	Y	A	D	L	S	.	.	.	K	N	R	T	T	D	Y	I	F	D	W	D	N	M	L	A	F
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence		L	P	E	A	L	V	N	Y	L	A	L	L	G	W	S	H	P	E	G	K	E	L	L	T	L	E	E	L	I	S	S
Template Known Secondary structure												T	S	S	B			T	T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions