Phyre 2 alignment of P11875 with c1irxA

Job Description P11875
Confidence 99.95% Date Thu Jan 5 11:32:57 GMT 2012

Rank 34 Aligned Residues 283

% Identity 15% Template c1irxA_

PDB info PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of class i lysyl-trna synthetase

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	E	K	Q	T	I	V	V	D	Y	S	A	P	N	V	A	K	E	M	H	V	G	H	L	R	S	T	I	I	G	D	A	A	V	R	T	L	E	F	L	G	H	K	V	I	R	A	N	H	V	G	D	W	G	T	Q	F	G	M	L	I	A	W	L	E	K	Q	Q	Q	E	N	A	G	E	M	E	L	A	D	L
Query Conservation
Alig confidence											.																																														.	.	.	.	.
Template Conservation											.																																														.	.	.	.	.
Template Sequence	G	E	K	E	K	Y	V	V	E	S	.	G	I	T	P	S	G	Y	V	H	V	G	N	F	R	E	L	F	T	A	Y	I	V	G	H	A	L	R	D	K	G	Y	E	V	R	H	I	H	M	W	D	D	Y	D	R	F	.	.	.	.	.	R	K	V	P	R	N	V	P	Q	E	W	K	D	Y	L	G	M	P	I
Template Known Secondary structure				S							.					S	S																						T	T	T											T	T	S	B		.	.	.	.	.					S	S	S		G	G	G	G	G	G	T	T	S	B	G
Template Predicted Secondary structure											.																																														.	.	.	.	.
Template SS confidence
	17	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90

	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence	E	G	F	Y	R	D	A	K	K	H	Y	D	E	D	E	E	F	A	E	R	A	R	N	Y	V	V	K	L	Q	S	G	D	E	Y	F	R	E	M	W	R	K	L	V	D	I	T	M	T	Q	N	Q	I	T	Y	D	R	L	N	V	T	L	T	R	D	D	V	M	G	E	S	L	Y	N	P	M	L	P	G	.	.
Query Conservation																																																																															.	.
Alig confidence																																																																															.	.
Template Conservation
Template Sequence	S	E	V	P	D	P	W	G	C	H	E	S	Y	A	E	H	F	M	R	K	F	E	E	E	V	E	K	L	G	I	E	V	D	L	L	Y	A	S	E	L	Y	K	R	G	E	Y	S	E	E	I	R	L	A	F	E	K	R	D	K	I	M	E	I	L	N	K	Y	R	E	I	A	K	Q	P	P	L	P	E	N	W
Template Known Secondary structure	G	G	S			T	T	S	S	S	S	S															T	T	T														T	T	T	T										T															T	T						T	T
Template Predicted Secondary structure
Template SS confidence
	91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

						268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure	.	.	.	.	.
Query SS confidence	.	.	.	.	.
Query Sequence	.	.	.	.	.	I	V	A	D	L	K	A	K	G	L	A	V	E	S	E	G	A	T	V	V	F	L	D	E	F	K	N	K	E	G	E	P	M	G	V	I	I	Q	K	K	D	G	G	Y	L	Y	T	T	T	D	I	A	C	A	K	Y	R	Y	E	T	L	H	A	D	R	V	L	Y	Y	I	D	S	R	Q	H
Query Conservation	.	.	.	.	.
Alig confidence	.	.	.	.	.																						.	.	.																																	.	.	.	.					.	.
Template Conservation																											.	.	.																																	.	.	.	.					.	.
Template Sequence	W	P	A	M	V	Y	C	P	E	H	R	R	E	A	E	I	I	E	W	D	G	G	W	K	V	K	.	.	.	Y	K	C	P	E	G	H	E	G	W	V	D	I	R	S	G	N	V	K	L	R	W	R	V	D	W	P	M	R	W	S	H	.	.	.	.	F	G	V	D	.	.	F	E	P	A	G	K	D	H	L
Template Known Secondary structure		S						T	T	T											S	S	S				.	.	.				S	S	S							T	T	S	S																	.	.	.	.	S				.	.	B
Template Predicted Secondary structure																											.	.	.																																	.	.	.	.					.	.
Template SS confidence
	171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.			.	.	.	.	.	.	.	240	.

	343						.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence	Q	.	.	.	.	.	H	L	M	Q	A	W	A	I	V	R	K	A	G	Y	V	P	E	S	V	P	L	E	H	H	M	F	G	M	M	L	G	K	D	G	K	P	F	K	T	R	A	G	G	T	V	K	L	A	D	L	L	D	E	A	L	E	R	A	R	R	L	V	A	E	K	N	P	D	M	P	A	D	E	L
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.							.									.	.									.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.									.	.									.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	A	G	S	S	Y	D	T	G	K	E	I	.	I	K	E	V	Y	G	K	E	.	.	A	P	L	S	L	M	Y	E	.	.	.	.	.	.	.	.	.	.	F	V	G	I	K	G	Q	N	V	I	L	L	S	D	L	Y	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure	S	T	T	S									.									.	.			B						.	.	.	.	.	.	.	.	.	.					S												T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.									.	.									.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	242	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.											270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

	418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	K	L	A	N	A	V	G	I	G	A	V	K	Y	A	D	L	S	K	N	R	T	T	D	Y	I	F	D	W	D
Query Conservation
Alig confidence	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	L	E	P	G	L	V	R	F	I	Y	A	R	H	R	P	N	K	E	I	K	I	D	L	G
Template Known Secondary structure	.	.	.	.	.	.	S											S	S		T	T	S							S
Template Predicted Secondary structure	.	.	.	.	.	.
Template SS confidence
							297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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