Job Description P11875 Confidence 100.00% Date Thu Jan 5 11:32:57 GMT 2012 Rank 3 Aligned Residues 548 % Identity 28% Template c1iq0A_ PDB info PDB header:ligase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: thermus thermophilus arginyl-trna synthetase Resolution 2.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	A	L	L	S	E	K	V	R	Q	A	M	I	A	A	G	A	P	A	D	C	E	P	Q	V	R	Q	S	A	K	V	Q	F	G	D	Y	Q	A	N	G	M	M	A	V	A	K	K	L	G	M	A	P	R	Q	L	A	E	Q	V	L	T	H	L	D	L	N	G	I	A	S	K	V	E	I	A	G	P	G	F
Query Conservation
Alig confidence																								.	.																		.																																				.
Template Conservation																								.	.																		.																																				.
Template Sequence		L	R	R	A	L	E	E	A	I	A	Q	A	L	K	E	M	G	V	P	V	R	L	.	.	K	V	A	R	A	P	K	D	K	P	G	D	Y	G	V	P	L	.	F	A	L	A	K	E	L	R	K	P	P	Q	A	I	A	Q	E	L	K	D	R	L	P	L	P	E	F	V	E	E	A	V	P	V	G	.	G	Y
Template Known Secondary structure																T	T	S						.	.						S	T	T	S	S		S						.	S						T	T	S												T					T	T								T	.	T
Template Predicted Secondary structure																								.	.																		.																																				.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	I	F	L	D	P	A	F	L	A	E	H	V	Q	Q	A	L	A	S	D	R	L	G	V	A	T	P	E	K	Q	T	I	V	V	D	Y	S	A	P	N	V	A	K	E	M	H	V	G	H	L	R	S	T	I	I	G	D	A	A	V	R	T	L	E	F	L	G	H	K	V	I	R	A	N	H	V	G	D	W
Query Conservation
Alig confidence																		.	.								.	.	.
Template Conservation																		.	.								.	.	.
Template Sequence		L	N	F	R	L	R	T	E	A	L	L	R	E	A	L	R	.	.	P	K	A	P	F	P	R	.	.	.	R	P	G	V	V	L	V	E	H	T	S	V	N	P	N	K	E	L	H	V	G	H	L	R	N	I	A	L	G	D	A	I	A	R	I	L	A	Y	A	G	R	E	V	L	V	L	N	Y	I	D	D	T
Template Known Secondary structure																	S	.	.								.	.	.														T	T	S			B																				T	T											T	T
Template Predicted Secondary structure																		.	.								.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	Q	F	G	M	L	I	A	W	L	E	K	Q	Q	Q	E	N	A	G	E	M	E	L	A	D	L	E	G	F	Y	R	D	A	K	K	H	Y	D	E	D	E	E	F	A	E	R	A	R	N	Y	V	V	K	L	Q	S	G	D	E	Y	F	R	E	M	W	R	K	L	V	D	I	T	M	T	Q	N	Q	I	T
Query Conservation
Alig confidence																																																													.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.
Template Sequence		G	R	Q	A	A	E	T	L	F	A	L	R	H	Y	G	L	T	W	D	G	K	E	K	Y	D	H	F	A	G	R	A	Y	V	R	L	H	Q	D	P	E	Y	E	R	L	Q	P	A	I	E	E	V	L	H	A	L	E	R	G	E	.	.	.	.	.	.	L	R	E	E	V	N	R	I	L	L	A	Q	M	A	T
Template Known Secondary structure		S													T	T					S	S	S																	T	T	T	G	G	G													T	T	T	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																													.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.							.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		Y	D	R	L	N	V	T	L	T	R	D	D	V	M	G	E	S	L	Y	N	P	M	L	P	G	I	V	A	D	L	K	A	K	G	L	A	V	E	S	E	.	.	.	.	.	G	A	T	V	V	F	L	D	E	F	K	N	K	E	G	E	P	M	G	V	I	I	Q	K	K	D	G	G	Y	L	Y	T	T	T	D
Query Conservation																																										.	.	.	.	.
Alig confidence																																										.	.	.	.	.														.
Template Conservation																																																												.
Template Sequence		M	H	A	L	N	A	R	Y	D	L	L	V	W	E	S	D	I	V	R	A	G	L	L	Q	K	A	L	A	L	L	E	Q	S	P	H	V	F	R	P	R	E	G	K	Y	A	G	A	L	V	M	D	A	S	P	V	I	P	G	.	L	E	D	P	F	F	V	L	L	R	S	N	G	T	A	T	Y	Y	A	K	D
Template Known Secondary structure					T	T				S											T	T										T	T	S	T	T					S	S	S	T	T	T	T							T	T	T	S		S	.		S									T	T	S		B
Template Predicted Secondary structure																																																												.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.																													.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	C	A	K	Y	R	Y	E	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	D	R	V	L	Y	Y	I	D	S	R	Q	H	Q	H	L	M	Q	A	W	A	I	V	R	K	A	G	Y	V	P	E	S	V	P	L	E	H	H	M	F
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	F	Q	F	W	K	M	G	I	L	E	G	L	R	F	R	P	Y	E	N	P	Y	Y	P	G	L	R	T	S	A	P	E	G	E	A	Y	T	P	K	A	E	E	T	I	N	V	V	D	V	R	Q	S	H	P	Q	A	L	V	R	A	A	L	A	L	A	G	Y	P	A	L	A	E	K	A	H	H	L	A	Y
Template Known Secondary structure									T	T	S	S											S	S		T	T																S								S	S	S														T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	M	L	G	K	D	G	K	P	F	K	T	R	A	G	G	T	V	K	L	A	D	L	L	D	E	A	L	E	R	A	R	R	L	V	A	E	K	N	P	D	M	P	A	D	E	L	E	K	L	A	N	A	V	G	I	G	A	V	K	Y	A	D	L	S	K	N	R	T	T	D	Y	I	F	D	W	D	N	M
Query Conservation
Alig confidence							.	.	.	.	.																																	.	.
Template Conservation							.	.	.	.	.																																	.	.
Template Sequence		E	T	V	L	L	.	.	.	.	.	E	G	R	Q	M	S	G	A	V	S	V	D	E	V	L	E	E	A	T	R	R	A	R	A	I	V	E	E	K	N	P	D	.	.	H	P	D	K	E	E	A	A	R	M	V	A	L	G	A	I	R	F	S	M	V	K	T	E	P	K	K	Q	I	D	F	R	Y	Q	E	A
Template Known Secondary structure							.	.	.	.	.	T	T	B		S					B																					T	T	.	.		S																					S		T	T	S
Template Predicted Secondary structure							.	.	.	.	.																																	.	.
Template SS confidence
		386	.	.	.	390						.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.			.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	F	E	G	N	T	A	P	Y	M	Q	Y	A	Y	T	R	V	L	S	V	F	R	K	A	E	I	D	E	E	Q	L	A	A	A	P	V	I	I	R	E	D	R	E	A	Q	L	A	A	R	L	L	Q	F	E	E	T	L	T	V	V	A	R	E	G	T	P	H	V	M	C	A	Y	L	Y	D	L	A	G	L
Query Conservation
Alig confidence																																						.	.	.	.
Template Conservation																																						.	.	.	.
Template Sequence		L	S	F	E	G	D	T	G	P	Y	V	Q	Y	A	H	A	R	A	H	S	I	L	R	K	A	G	E	W	G	A	P	D	L	S	Q	A	.	.	.	.	T	P	Y	E	R	A	L	A	L	D	L	L	D	F	E	E	A	V	L	E	A	A	E	E	R	T	P	H	V	L	A	Q	Y	L	L	D	L	A	A	S
Template Known Secondary structure				S	S	S	S	S																										G	G	G		.	.	.	.												T	T												T
Template Predicted Secondary structure																																						.	.	.	.
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.					.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
		530	.	.	.	.	.	.	.	.	.	540							.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.
Query Sequence		F	S	G	F	Y	E	H	C	P	I	L	.	.	.	.	.	.	S	A	E	N	E	E	V	R	N	S	R	L	K	L	A	Q	L	T	A	K	T	L	K	L	G	L	D	T	L	G	I	E	T	V	E	R	M
Query Conservation													.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.
Template Conservation
Template Sequence		W	N	A	Y	Y	N	A	R	E	N	G	Q	P	A	T	P	V	L	T	A	P	E	G	L	R	E	L	R	L	S	L	V	Q	S	L	Q	R	T	L	A	T	G	L	D	L	L	G	I	P	A	P	E	V	M
Template Known Secondary structure											T	T			S	S		S	T	T	S		T	T																							T	T					S
Template Predicted Secondary structure
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.