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Job DescriptionP11875
Confidence100.00%DateThu Jan 5 11:32:57 GMT 2012
Rank22Aligned Residues404
% Identity24%Templatec1gaxB_
PDB info PDB header:ligase/rnaChain: B: PDB Molecule:valyl-trna synthetase; PDBTitle: crystal structure of thermus thermophilus valyl-trna2 synthetase complexed with trna(val) and valyl-adenylate3 analogue
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   93......100.........110.........120.........130.........140.........150.........160.........170..
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Query Sequence  AEHVQQALASDRLGVATPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAW
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Template Sequence  PKWAEKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVER
Template Known Secondary structure  S




SS
SS




BSSS


TTS
B

TT
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   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   173......180.........190.........200.........210.........220.........230.........240.........250.
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Query Sequence  LEKQQQENAGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLT.
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Template Conservation                
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Template Sequence  LLLKEGKTRHDLGRE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KFLERVWQWKEESGGTILKQLKRLGASADW
Template Known Secondary structure  TTTTTSS

S


...................................TT



G
Template Predicted Secondary structure 





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   94.....100........ .110.........120.........130........
 
   252.......260.........270.........280..
Predicted Secondary structure  .





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Query Sequence  . RDDVMGESLYNPMLPGIVADLKAKGLAVESE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGGGFIEIATVRPE
Template Known Secondary structure  GG
TTSTTSS



BTTTTB


GGG






SSS


S
SG
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   139140.........150.........160.........170.........180.........190.........200.........210........
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation 

    
  


       
 
     
     


     
    


 
   
 
   
        
     
   
Template Sequence  TVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEG
Template Known Secondary structure  GGTT



TTGGGT
S
SS




TTS





TT

TTSSSS

TTT






SB
TTS
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   219220.........230.........240.........250.........260.........270.........280.........290........
 
   283....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GATVV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation              
     

  
   
   
 
          
 
 
    
      



                 
Template Sequence  RMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGD
Template Known Secondary structure 
B

SSS
TTTSSS
SSTTTTTT




TTT

B





T
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   299300.........310.........320.........330.........340.........350.........360.........370........
 
   288.290...... ...300........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . FLDEFKNKE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GEPMGVIIQKKD
Query Conservation  ..........................         .................................    
 

 


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Template Sequence  IAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFS
Template Known Secondary structure  SSSSTT







SSS
B


TTT




GGGTTS


S
TTT

S



B

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   379380.........390.........400.........410.........420.........430.........440.........450........
 
   309310.........320.........330.........340.........350.........360.........370.........380........
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Query Sequence  GGYLYTTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYVPESVPLEHHMFGMMLGKDGKPFKTRAGGTV
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Template Sequence  SALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRME. VSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVI
Template Known Secondary structure  TS
TTGGGTTTTT
SS
S
GGGTTTT.TTSSS
S



TTS
B

TTTT


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   459460.........470.........480.........490.........500 .........510.........520.........530.......
 
   389390.........400.........410.........420.........430........ .440.........450.........460.......
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Query Sequence  KLADLLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNR. TTDYIFDWDNMLAFEGNTAPYMQYAYTRV
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Template Sequence  DPLEMVER. . . . . . . . . . . . . . . . . . . . . . . . . . . YGADALRFALIYLATGGQDIRLDLRWL. EMARNFANKLYNAARFV
Template Known Secondary structure 
...........................T


TT



T.
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   538.540..... ....550.........560.........570.. .......580.........
 
   468.470.........480.........490.........500.........510.........520....... ..530.........540.....
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Query Sequence  LSVFRKAEIDEEQLAAAPVIIREDREAQLAARLLQFEETLTVVAREGTPHVMCAYLYDLA. . GLFSGFYEHCPILSAENE
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Template Conservation                ........   
  

  
   
  
    
      
   
           

   
       
Template Sequence  LLSREGFQAKEDTP. . . . . . . . TLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGN
Template Known Secondary structure  TT



B


........
TT





TTTTB
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   590.........600... ......610.........620.........630.........640.........650.........660.
 
   546...550.........560.........570....
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Query Sequence  EVRNSRLKLAQLTAKTLKLGLDTLGIETV
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Template Conservation        
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Template Sequence  AHTLRTL. . . . . . EEVLAVLLKLLHPMMP
Template Known Secondary structure  ......TTTS
Template Predicted Secondary structure  ......

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   662...... .670.........680....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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