Job Description P11875 Confidence 100.00% Date Thu Jan 5 11:32:57 GMT 2012 Rank 1 Aligned Residues 561 % Identity 32% Template c1f7uA_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of the arginyl-trna synthetase complexed with the2 trna(arg) and l-arg Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		M	N	I	Q	A	L	L	S	E	K	V	R	Q	A	M	I	A	A	G	A	P	A	.	.	D	C	E	P	Q	V	R	Q	S	A	K	V	Q	F	G	D	Y	Q	A	N	G	M	M	A	V	A	K	K	L	G	M	A	P	R	Q	L	A	E	Q	V	L	T	H	L	D	L	N	G	I	A	S	K	V	E	I	A
Query Conservation																								.	.
Alig confidence																								.	.																								.	.
Template Conservation																																																	.	.
Template Sequence		V	N	I	V	D	L	M	R	N	Y	I	S	Q	E	L	S	K	I	S	G	V	D	S	S	L	I	F	P	A	L	E	W	T	N	T	M	E	R	G	D	L	L	I	P	I	P	R	.	.	L	R	I	K	G	A	N	P	K	D	L	A	V	Q	W	A	E	K	F	P	C	G	D	F	L	E	K	V	E	A	N
Template Known Secondary structure		T																										G	G	G					S	S	G	G	G		S					G	G	G	.	.	G			T	T													T				T	T	T
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																								.	.										.
Query SS confidence																								.	.										.
Query Sequence		G	P	G	F	I	N	I	F	L	D	P	A	F	L	A	E	H	V	Q	Q	A	L	.	.	A	S	D	R	L	G	V	A	T	.	P	E	K	Q	T	I	V	V	D	Y	S	A	P	N	V	A	K	E	M	H	V	G	H	L	R	S	T	I	I	G	D	A	A	V	R	T	L	E	F	L	G	H	K	V	I	R
Query Conservation																								.	.										.
Alig confidence				.																				.	.										.
Template Conservation				.
Template Sequence		G	P	.	F	I	Q	F	F	F	N	P	Q	F	L	A	K	L	V	I	P	D	I	L	T	R	K	E	D	Y	G	S	C	K	L	V	E	N	K	K	V	I	I	E	F	S	S	P	N	I	A	K	P	F	H	A	G	H	L	R	S	T	I	I	G	G	F	L	A	N	L	Y	E	K	L	G	W	E	V	I	R
Template Known Secondary structure		T	T	.																							G	G	G	T	T					S	S												B	T	T	S			B	G	G	G																	T	T
Template Predicted Secondary structure				.
Template SS confidence
		107	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.								.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																								.																													.	.	.	.	.	.	.
Query SS confidence																								.																													.	.	.	.	.	.	.
Query Sequence		A	N	H	V	G	D	W	G	T	Q	F	G	M	L	I	A	W	L	E	K	Q	Q	.	Q	E	N	A	G	E	M	E	L	A	D	L	E	G	F	Y	R	D	A	K	K	H	Y	D	E	D	E	E	.	.	.	.	.	.	.	F	A	E	R	A	R	N	Y	V	V	K	L	Q	S	G	D	E	Y	F	R	E	M
Query Conservation																								.																													.	.	.	.	.	.	.
Alig confidence																								.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	N	Y	L	G	D	W	G	K	Q	F	G	L	L	A	V	G	F	E	R	Y	G	N	E	E	A	L	V	K	D	P	I	H	H	L	F	D	V	Y	V	R	I	N	K	D	I	E	E	E	G	D	S	I	P	L	E	Q	S	T	N	G	K	A	R	E	Y	F	K	R	M	E	D	G	D	E	E	A	L	K	I
Template Known Secondary structure						B			S																																									S	T	T	S	S						S	S													T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.
Predicted Secondary structure																																		.																																												.
Query SS confidence																																		.																																												.
Query Sequence		W	R	K	L	V	D	I	T	M	T	Q	N	Q	I	T	Y	D	R	L	N	V	T	L	T	R	D	D	V	M	G	E	S	.	L	Y	N	P	M	L	P	G	I	V	A	D	L	K	A	K	G	L	A	V	E	S	E	G	A	T	V	V	F	L	D	E	F	K	N	K	E	G	E	P	M	G	V	.	I	I	Q
Query Conservation																																		.																																												.
Alig confidence																									.	.								.																																		.	.	.	.							.
Template Conservation																									.	.																																										.	.	.	.
Template Sequence		W	K	R	F	R	E	F	S	I	E	K	Y	I	D	T	Y	A	R	L	N	I	K	Y	.	.	D	V	Y	S	G	E	S	Q	V	S	K	E	S	M	L	K	A	I	D	L	F	K	E	K	G	L	T	H	E	D	K	G	A	V	L	I	D	L	T	K	F	.	.	.	.	N	K	K	L	G	K	A	I	V	Q
Template Known Secondary structure																				T	T				.	.	S					G	G	G																T	T						T	T						G	G	G	T	.	.	.	.		T	T	T
Template Predicted Secondary structure																									.	.																																										.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.					330	.	.	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	D	G	G	Y	L	Y	T	T	T	D	I	A	C	A	K	Y	R	Y	E	T	L	H	A	D	R	V	L	Y	Y	I	D	S	R	Q	H	Q	H	L	M	Q	A	W	A	I	V	R	K	A	G	Y	V	P	E	S	V	P	L	E	H	H	M	F	G	M	M	L	G	K	D	G	K	P	F	K	T	R	A	G
Query Conservation
Alig confidence																																																						.																.	.	.	.	.
Template Conservation																																																						.																.	.	.	.	.
Template Sequence		K	S	D	G	T	T	L	Y	L	T	R	D	V	G	A	A	M	D	R	Y	E	K	Y	H	F	D	K	M	I	Y	V	I	A	S	Q	Q	D	L	H	A	A	Q	F	F	E	I	L	K	Q	M	G	F	.	E	W	A	K	D	L	Q	H	V	N	F	G	M	V	Q	.	.	.	.	.	G	M	S	T	R	K	G
Template Known Secondary structure			T	T	S																						S								G	G	G														T	T		.	G	G	G	G	G											.	.	.	.	.	S			G	G	G	T
Template Predicted Secondary structure																																																						.																.	.	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.						.	.	.	410	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		G	T	V	K	L	A	D	L	L	D	E	A	L	E	R	A	R	R	L	V	A	E	K	N	P	.	D	M	P	A	D	E	L	E	K	L	A	N	A	V	G	I	G	A	V	K	Y	A	D	L	S	K	N	R	T	T	D	Y	I	F	D	W	D	N	M	L	A	F	E	G	N	T	A	P	Y	M	Q	Y	A	Y
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		T	V	V	F	L	D	N	I	L	E	E	T	K	E	K	M	H	E	V	M	K	K	N	E	N	K	Y	A	Q	I	E	H	P	E	E	V	A	D	L	V	G	I	S	A	V	M	I	Q	D	M	Q	G	K	R	I	N	N	Y	E	F	K	W	E	R	M	L	S	F	E	G	D	T	G	P	Y	L	Q	Y	A	H
Template Known Secondary structure					B																		T						T	T		S																				S	S		T	T														S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.			480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		T	R	V	L	S	V	F	R	K	A	E	I	D	E	E	.	.	Q	L	A	A	A	P	V	I	I	R	E	D	R	E	A	Q	L	A	A	R	L	L	Q	F	E	E	T	L	T	V	V	A	R	E	G	T	P	H	V	M	C	A	Y	L	Y	D	L	A	G	L	F	S	G	F	Y	E	H	C	P	I	L	S	A
Query Conservation																	.	.
Alig confidence																	.	.																																																															.
Template Conservation																																																																																	.
Template Sequence		S	R	L	R	S	V	E	R	N	A	S	G	I	T	Q	E	K	W	I	N	A	D	F	S	L	L	K	E	P	A	A	K	L	L	I	R	L	L	G	Q	Y	P	D	V	L	R	N	A	I	K	T	H	E	P	T	T	V	V	T	Y	L	F	K	L	T	H	Q	V	S	S	C	Y	D	V	L	W	V	A	G	.
Template Known Secondary structure											T	T	T	S						T	T	S		G	G	G			S											T	T																																					S	T	T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	E	E	V	R	N	S	R	L	K	L	A	Q	L	T	A	K	T	L	K	L	G	L	D	T	L	G	I	E	T	V	E	R	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	T	E	E	L	A	T	A	R	L	A	L	Y	G	A	A	R	Q	V	L	Y	N	G	M	R	L	L	G	L	T	P	V	E	R	M
Template Known Secondary structure		S																											T					S
Template Predicted Secondary structure
Template SS confidence
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.