Job Description P42588 Confidence 99.62% Date Thu Jan 5 12:01:35 GMT 2012 Rank 223 Aligned Residues 296 % Identity 14% Template d2hoxa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like Resolution 1.40

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		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.								.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.																																	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.																																	.	.	.	.	.	.	.
Query Sequence		A	K	Q	P	L	H	S	Q	E	L	L	D	P	L	R	A	M	L	A	K	T	L	A	A	L	T	P	G	.	.	.	.	.	.	K	L	K	Y	S	F	F	C	N	S	G	T	E	S	V	E	A	A	L	K	L	A	K	A	Y	Q	S	P	R	G	K	F	.	.	.	.	.	.	.	T	F	I	A	T	S	G
Query Conservation																														.	.	.	.	.	.																																	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.																							.	.	.	.							.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.
Template Sequence		H	R	M	S	Y	F	F	N	P	V	S	N	F	I	S	F	E	L	E	K	T	I	K	E	L	H	E	V	V	G	N	A	A	A	K	D	R	Y	I	V	F	G	V	G	V	T	Q	L	I	H	G	L	V	I	S	L	.	.	.	.	S	P	N	M	T	A	T	P	D	A	P	E	S	K	V	V	A	H	A	P
Template Known Secondary structure		T	T		S	S	S		S	S			T	T																	T		B			T	T							S														.	.	.	.	S			T	T	T		T	T	S									S	S
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	H	G	K	S	L	G	A	L	S	A	T	A	K	S	T	F	R	K	P	F	M	P	L	L	P	G	F	R	H	V	P	F	G	N	I	E	A	M	R	T	A	L	N	E	C	K	K	T	G	D	D	V	A	A	V	I	L	E	P	I	Q	G	E	G	G	V	I	L	P	P	P	G	Y	L	T	A	V	R
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Sequence		F	Y	P	V	F	R	E	Q	T	K	Y	F	D	K	K	G	Y	V	W	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	A	N	Y	V	N	V	S	N	.	.	.	.	.	.	P	E	Q	Y	I	E	M	V	T	S	P	N	N	P	E	G	L	L	R	H	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													S			T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	T	T		S		.	.	.	.	.	.	G	G	G							S	S		T	T	T						.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.															.	.	.	.	.	190	.	.	.	.							.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		K	L	C	D	E	F	G	A	L	M	I	L	D	E	V	Q	T	G	M	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	I	L	C	L	A	K	A	L	G	G	G	V	M	P	I	G	A	.	T	I	A	T	E	E	V	F	S	V	L	F	D	N	P	F	L	H	T	T	T	F	G	G	N	P
Query Conservation																																																							.
Alig confidence		.	.																								.	.	.																										.												.	.
Template Conservation		.	.																								.	.	.																																						.	.
Template Sequence		.	.	A	V	I	K	G	C	K	S	I	Y	D	M	V	Y	Y	W	P	H	Y	T	P	I	K	.	.	.	Y	K	A	D	E	D	I	L	L	F	T	M	S	K	F	T	G	H	S	G	S	R	F	G	W	A	L	I	K	D	E	S	V	Y	N	N	L	.	.	L	N	Y	M	T	K	N	T	E	G	T	P	R
Template Known Secondary structure		.	.		S	S	T	T								T	T		S	T	T	T	S				.	.	.	S		B			S										T	S		G	G	G																	.	.								T	S	S
Template Predicted Secondary structure		.	.																								.	.	.																																						.	.
Template SS confidence
				215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350										.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.															.	390	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	C	A	A	A	L	A	T	I	N	V	L	.	.	.	.	.	.	.	.	.	L	E	Q	N	L	P	A	Q	A	E	Q	K	G	D	M	L	L	D	G	F	R	Q	L	A	R	E	Y	P	D	L	V	Q	E	A	R	G	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	M	A	I	E
Query Conservation															.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	Q	L	R	S	L	K	V	L	K	E	V	V	A	M	V	K	T	Q	K	G	T	M	R	D	L	N	T	F	G	F	K	K	L	R	E	R	W	V	N	I	T	A	L	L	D	Q	S	D	R	F	S	Y	Q	E	L	P	Q	S	E	Y	C	N	Y	F	R	R	M	R	P	P	S	P	S	Y	A	W	V	K
Template Known Secondary structure																						T	T	S	T	T	S																					T	T	S	S	S								S					T	T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.				.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		F	V	D	N	E	I	G	Y	N	F	A	S	E	M	F	R	Q	R	V	L	V	A	G	T	L	N	N	A	K	.	.	.	T	I	R	I	E	P	P	L	T	L	T	I	E	Q	C	E	L	V	I	K	A	A	R	K	A	L	A
Query Conservation																															.	.	.
Alig confidence						.																									.	.	.						.	.
Template Conservation						.																																	.	.
Template Sequence		C	E	W	E	.	E	D	K	D	C	Y	Q	T	F	Q	N	G	R	I	N	T	Q	N	G	V	G	F	E	A	S	S	R	Y	V	R	L	S	.	.	L	I	K	T	Q	D	D	F	D	Q	L	M	Y	Y	L	K	D	M	V	K
Template Known Secondary structure				S	G	.	G	G		S								T	T						G	G	G	G	T	S		T	T						.	.		S	S																	T
Template Predicted Secondary structure						.																																	.	.
Template SS confidence
		368	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.			.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions