223 d2hoxa1 Probab=99.62   E-value=7.2e-14  Score=104.22  Aligned_columns=296  Identities=14%

Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHCCC------CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC-------EEEEEEC
Q ss_conf             8447647887998999999999986699------80179984896889999999999996138995-------8999707
Q batch____       112 AKQPLHSQELLDPLRAMLAKTLAALTPG------KLKYSFFCNSGTESVEAALKLAKAYQSPRGKF-------TFIATSG  178 (459)
Q Consensus       112 ~~~~~~~~~~~~~~~~~lae~L~~~~~~------~~~~v~f~~sGseA~e~Alkla~~~~~~~Gr~-------~ii~~~~  178 (459)
                      ++.++......++...+|.+.+.++...      +...+.|+++.+++...+++..    ..+|..       .+++...
T Consensus        88 ~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL----~~pGd~v~~~~p~~v~~~~p  163 (425)
T d2hoxa1          88 HRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISL----SPNMTATPDAPESKVVAHAP  163 (425)
T ss_dssp             TTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHH----SCCTTTCTTSCCEEEEECSS
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHH----CCCCCCCCCCCCCEEEECCH
T ss_conf             54565456643445289999999998850886788776999468899999999986----48886123567743573002


Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf             75425898987338711146877779980356888999999999998616996799999455578988658988999999
Q batch____       179 AFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVR  258 (459)
Q Consensus       179 ~yHG~t~~al~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~aavivEpv~~~~G~~~~~~~~l~~l~  258 (459)
                      .|-.....+.........-..              |.+.++..++      +++.++++..-+|..|.+.+         
T Consensus       164 ~y~~~~~~~~~~~~~~~~~~~--------------d~~~~~~~~~------~~~~~~~i~~P~NPtG~v~~---------  214 (425)
T d2hoxa1         164 FYPVFREQTKYFDKKGYVWAG--------------NAANYVNVSN------PEQYIEMVTSPNNPEGLLRH---------  214 (425)
T ss_dssp             CCHHHHHHHHHSCCTTEEEEE--------------EGGGGTTCSC------GGGEEEEEESSCTTTCCCCC---------
T ss_pred             HHHHHHHHHHHCCCCCCCCCC--------------CHHHHHHHCC------CCCEEEEECCCCCCCCEEEE---------
T ss_conf             377899999855997444247--------------9889997248------88579998178888560654---------


Q ss_pred             HHHHHCCEEEEEECCCCCCEEECCCCCCCCCCCCCCEEEECCHHCCCCCCHHH-HCCCHHHHHHHCCCCCEEECCCCHHH
Q ss_conf             98642571899857710450336765311222255446501110154200121-01368999761056743511440788
Q batch____       259 KLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGA-TIATEEVFSVLFDNPFLHTTTFGGNP  337 (459)
Q Consensus       259 ~lc~~~gillI~DEv~tG~gr~G~~~a~~~~gv~pDi~t~~K~l~~G~~piga-v~~~~~i~~~~~~~~~~~~~t~~~~~  337 (459)
                        |.++|+++|.||++..+-.++..   ...+-...+.++||.++..|+.+|+ ++..+++.+.+  .......+.+.+.
T Consensus       215 --a~~~~~~~i~De~y~~~~~~~~~---~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l--~~~~~~~~~~~s~  287 (425)
T d2hoxa1         215 --AVIKGCKSIYDMVYYWPHYTPIK---YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNL--LNYMTKNTEGTPR  287 (425)
T ss_dssp             --CSSTTCEEEEECTTCSTTTSCCC---SCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHH--HHHHHHHTSSCCH
T ss_pred             --EEECCCEEEEECCCCCCCCCCCC---CCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHH--HHHHHCCCCCCCH
T ss_conf             --23239689971432343323333---4568549998155101233231018996898999999--9864105777368


Q ss_pred             HHHHHHHHHHHHH---------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------------CEEEEE
Q ss_conf             9999999987652---------00208999999999999999999876486444544554--------------379999
Q batch____       338 LACAAALATINVL---------LEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKG--------------MLMAIE  394 (459)
Q Consensus       338 ~a~aaa~a~l~~~---------~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G--------------~~~~i~  394 (459)
                      .+..++.+.+...         ...++.+..++.-..-++.|.+...+.+...-.....+              .+..+.
T Consensus       288 ~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~  367 (425)
T d2hoxa1         288 ETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVK  367 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEE
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             99999999960201345655554899999999999999999999986357630034565543221001377876169986


Q ss_pred             ECCHHHHHHHHHHHHHCCEEEEEECCCCC---EEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             57957999999999978959994068997---899940888899999999999999999
Q batch____       395 FVDNEIGYNFASEMFRQRVLVAGTLNNAK---TIRIEPPLTLTIEQCELVIKAARKALA  450 (459)
Q Consensus       395 l~~~~~~~~~~~~l~~~Gv~v~~~~~~~~---~lrl~p~l~~T~eeid~~i~~l~~al~  450 (459)
                      +..+ ....+...+.++||+++++..++.   .+|++  +..|+|++|+++++|++.++
T Consensus       368 ~~~~-~~~~~~~lL~e~GI~v~pGs~FG~~~~~vRiS--l~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         368 CEWE-EDKDCYQTFQNGRINTQNGVGFEASSRYVRLS--LIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             ECSG-GGCSHHHHHHHTTEECEEGGGGTSCTTEEEEE--CSSCHHHHHHHHHHHHHHHT
T ss_pred             CCCC-CHHHHHHHHHHCCEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHHH
T ss_conf             7898-08999999996694997170238988659999--13998999999999999872