 |
Job Description | P77339 | Confidence | 8.19% | Date | Wed Jan 25 15:21:11 GMT 2012 |
Rank | 55 | Aligned Residues | 88 |
% Identity | 15% | Template | c1mbbA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:uridine diphospho-n-acetylenolpyruvylglucosamine |
PDBTitle: oxidoreductase
|
Resolution | 2.30 Å |
|
 |
  |   |
45 | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
60 | . | . | . | . | . | . | . | . | . | 70 | |
|
|
. | . | . | . | . | . | . | . | . | |
|
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |
|
|
|
|
|  | . | . | . | . | . |  |  |
|  |  |  |  |  |  |  |  | . | . | . |  |
|
|
|
|
|
|
|
| . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | Q | L | T | D | K | D | L | F | G | N | E | T | T | L | . |
. |
. |
. |
. |
A | V | S | E | E | D | I | Q | A | A | L | . |
. |
. |
D | G | D | E | F | R | V | P | L | . |
. |
N | S | P | V | I | L | V | Q | S | G | N | R | A | P | E | T | I | M | Q | E | E | M | R | K | Y | Y | T | V | S | T | F | S | G | I | P |
Query Conservation |   |
|
|
|
|
|
|
|
|   |
|
|
|
|
|   | . | . | . | . | . |   |
|
|
|
|
|
|
|
|
|   | . | . | . |   |   |   |   |   |   |
|
|
| . | . |
|   |   |
|   |
|
|
|
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |
|
|
|
|
|
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|
|   |   |
|
|
|   |
|   |   |
|
|   |
|   |
|   |
|
|
|   |   |   |
|   |   |
|   |   |   |   |
|
|
|   |
|   |
|
|
|
|
|
|
|   |   |
|   | . | . | . |   |   |
|   |
|
|
|   |   |   |   |   |   |   |
|   | . |   |
|   |   |   |
Template Sequence |   |
H | S | L | K | P | W | N | T | F | G | I | D | H | N | A | Q | H | I | V | C | A | E | D | E | Q | Q | L | L | N | A | W | Q | Y | A | T | A | E | G | Q | P | V | L | I | L | G | E | G | S | N | V | L | F | L | E | D | . |
. |
. |
Y | R | G | T | V | I | I | N | R | I | K | G | I | E | I | H | . |
D | E | P | D | A |
Template Known Secondary structure |   |
| B |
| G | G | G | S | T | T |
|
|
|
| B |  |  |  |  |  |  |  |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  | S | S |
| T | T |  |  |  |
| S |
| . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . |  |  | T | T |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
|
| . | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  | . |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
. | . | . | . | . |
  |
  |   |
115 | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | R | Q | K | P | L | T | C | N | K | N | K | D | K | N | E | N | E | D | V | A | S | A | E | N | M | N | W | M | Q | A | L | R | F | V | A | A | K | G |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|
|
|   |   |   |   |
|
|
|   |   |
|
|
|
|
|
|
|
|
Alig confidence |   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |
|   |
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|
Template Sequence |   |
W | Y | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | H | V | G | A | G | E | N | W | H | R | L | V | K | Y | T | L | Q | E | G |
Template Known Secondary structure |   |
 |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  | T | T | S | B |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
79 | 80 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|