Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	S	K	K	L	C	C	I	C	V	L	F	S	L	L	A	G	C	A	S	E	S	S	I	D	E	K	K	K	K	A	Q	V	T	Q	S	N	I	N	K	N	T	P	Q	Q	L	T	D	K	D	L	F	G	N	E	T	T	L	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?											?	?		?	?	?	?	?	?	?	?	?	?		?			?	?	?	?	?	?		?	?	?	?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	S	E	E	D	I	Q	A	A	L	D	G	D	E	F	R	V	P	L	N	S	P	V	I	L	V	Q	S	G	N	R	A	P	E	T	I	M	Q	E	E	M	R	K	Y	Y	T	V	S	T	F	S	G	I	P	D	R	Q	K	P	L
Secondary structure
SS confidence
Disorder		?	?							?		?	?	?	?		?	?												?			?	?	?		?						?												?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	C	N	K	N	K	D	K	N	E	N	E	D	V	A	S	A	E	N	M	N	W	M	Q	A	L	R	F	V	A	A	K	G	H	Q	K	A	I	I	V	Y	Q	D	M	L	Q	T	G	K	Y	D	S	A	L	K	S	T	V	W	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																													?	?	?	?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	Y	K	N	D	K	L	T	D	A	I	S	L	R	Y	L	V	R	F	T	L	V	D	V	A	T	G	E	W	A	T	W	S	P	V	N	Y	E	Y	K	V	L	P	P	L	P	D	K	N	E	A	S	T	T	D	M	T	E	Q	Q
Secondary structure
SS confidence
Disorder					?																							?										?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Sequence		I	M	Q	L	K	Q	K	T	Y	K	A	M	V	K	D	L	V	N	R	Y	Q
Secondary structure
SS confidence
Disorder																				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1fpo chain A Region: 50 - 69 Aligned: 20 Modelled: 20 Confidence: 40.2% Identity: 15% PDB header:chaperone Chain: A: PDB Molecule:chaperone protein hscb; PDBTitle: hsc20 (hscb), a j-type co-chaperone from e. coli Phyre2 PDB 1faf chain A Region: 50 - 69 Aligned: 20 Modelled: 20 Confidence: 40.0% Identity: 20% Fold: Long alpha-hairpin Superfamily: Chaperone J-domain Family: Chaperone J-domain Phyre2 PDB 3hho chain A Region: 50 - 69 Aligned: 20 Modelled: 20 Confidence: 37.0% Identity: 15% PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb homolog; PDBTitle: chaperone hscb from vibrio cholerae Phyre2 PDB 1fpo chain A domain 1 Region: 50 - 71 Aligned: 22 Modelled: 22 Confidence: 36.1% Identity: 14% Fold: Long alpha-hairpin Superfamily: Chaperone J-domain Family: Chaperone J-domain Phyre2 PDB 1gh6 chain A Region: 50 - 71 Aligned: 22 Modelled: 22 Confidence: 30.3% Identity: 23% Fold: Long alpha-hairpin Superfamily: Chaperone J-domain Family: Chaperone J-domain Phyre2 PDB 2pf4 chain E Region: 50 - 71 Aligned: 22 Modelled: 22 Confidence: 26.5% Identity: 23% PDB header:hydrolase regulator/viral protein Chain: E: PDB Molecule:small t antigen; PDBTitle: crystal structure of the full-length simian virus 40 small t antigen2 complexed with the protein phosphatase 2a aalpha subunit Phyre2 PDB 2dn9 chain A Region: 50 - 71 Aligned: 20 Modelled: 22 Confidence: 25.6% Identity: 25% PDB header:apoptosis, chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of j-domain from the dnaj homolog, human2 tid1 protein Phyre2 PDB 1uxy chain A domain 1 Region: 45 - 153 Aligned: 87 Modelled: 91 Confidence: 20.1% Identity: 20% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain Phyre2 PDB 2ctq chain A Region: 23 - 71 Aligned: 40 Modelled: 49 Confidence: 19.6% Identity: 18% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily c2 menber 12 Phyre2 PDB 1xbl chain A Region: 50 - 69 Aligned: 18 Modelled: 20 Confidence: 19.0% Identity: 33% Fold: Long alpha-hairpin Superfamily: Chaperone J-domain Family: Chaperone J-domain Phyre2 PDB 2ctw chain A Region: 50 - 69 Aligned: 18 Modelled: 20 Confidence: 18.8% Identity: 22% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 5; PDBTitle: solution structure of j-domain from mouse dnaj subfamily c2 menber 5 Phyre2 PDB 1k5g chain H Region: 125 - 199 Aligned: 62 Modelled: 62 Confidence: 18.0% Identity: 13% PDB header:signaling protein/signaling activator Chain: H: PDB Molecule:ran-specific gtpase-activating protein; PDBTitle: crystal structure of ran-gdp-alfx-ranbp1-rangap complex Phyre2 PDB 1k5d chain B Region: 125 - 199 Aligned: 62 Modelled: 62 Confidence: 18.0% Identity: 13% Fold: PH domain-like barrel Superfamily: PH domain-like Family: Ran-binding domain Phyre2 PDB 3bvo chain A Region: 18 - 71 Aligned: 53 Modelled: 54 Confidence: 17.9% Identity: 9% PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb Phyre2 PDB 1z67 chain A domain 1 Region: 53 - 73 Aligned: 21 Modelled: 21 Confidence: 17.2% Identity: 29% Fold: YidB-like Superfamily: YidB-like Family: YidB-like Phyre2 PDB 1z84 chain A domain 1 Region: 202 - 220 Aligned: 19 Modelled: 19 Confidence: 17.2% Identity: 32% Fold: HIT-like Superfamily: HIT-like Family: Hexose-1-phosphate uridylyltransferase Phyre2 PDB 2kqx chain A Region: 50 - 69 Aligned: 18 Modelled: 20 Confidence: 16.1% Identity: 22% PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa Phyre2 PDB 1guq chain A domain 1 Region: 203 - 215 Aligned: 13 Modelled: 13 Confidence: 15.1% Identity: 38% Fold: HIT-like Superfamily: HIT-like Family: Hexose-1-phosphate uridylyltransferase Phyre2 PDB 2o37 chain A Region: 50 - 71 Aligned: 20 Modelled: 22 Confidence: 14.0% Identity: 25% PDB header:chaperone Chain: A: PDB Molecule:protein sis1; PDBTitle: j-domain of sis1 protein, hsp40 co-chaperone from2 saccharomyces cerevisiae. Phyre2 PDB 1ta3 chain A Region: 149 - 163 Aligned: 13 Modelled: 15 Confidence: 13.8% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Type II chitinase Phyre2 1 c1fpoA_ 2 d1fafa_ 3 c3hhoA_ 4 d1fpoa1 5 d1gh6a_ 6 c2pf4E_ 7 c2dn9A_ 8 d1uxya1 9 c2ctqA_ 10 d1xbla_ 11 c2ctwA_ 12 c1k5gH_ 13 d1k5db_ 14 c3bvoA_ 15 d1z67a1 16 d1z84a1 17 c2kqxA_ 18 d1guqa1 19 c2o37A_ 20 d1ta3a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1fpoA_ 40.2 15 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein hscb; PDBTitle: hsc20 (hscb), a j-type co-chaperone from e. coli 2 d1fafa_ 40.0 20 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 3 c3hhoA_ 37.0 15 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb homolog; PDBTitle: chaperone hscb from vibrio cholerae 4 d1fpoa1 36.1 14 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 5 d1gh6a_ 30.3 23 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 6 c2pf4E_ 26.5 23 PDB header:hydrolase regulator/viral protein Chain: E: PDB Molecule:small t antigen; PDBTitle: crystal structure of the full-length simian virus 40 small t antigen2 complexed with the protein phosphatase 2a aalpha subunit 7 c2dn9A_ 25.6 25 PDB header:apoptosis, chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of j-domain from the dnaj homolog, human2 tid1 protein 8 d1uxya1 20.1 20 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain 9 c2ctqA_ 19.6 18 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily c2 menber 12 10 d1xbla_ 19.0 33 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 11 c2ctwA_ 18.8 22 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 5; PDBTitle: solution structure of j-domain from mouse dnaj subfamily c2 menber 5 12 c1k5gH_ 18.0 13 PDB header:signaling protein/signaling activator Chain: H: PDB Molecule:ran-specific gtpase-activating protein; PDBTitle: crystal structure of ran-gdp-alfx-ranbp1-rangap complex 13 d1k5db_ 18.0 13 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Ran-binding domain 14 c3bvoA_ 17.9 9 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 15 d1z67a1 17.2 29 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 16 d1z84a1 17.2 32 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 17 c2kqxA_ 16.1 22 PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa 18 d1guqa1 15.1 38 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 19 c2o37A_ 14.0 25 PDB header:chaperone Chain: A: PDB Molecule:protein sis1; PDBTitle: j-domain of sis1 protein, hsp40 co-chaperone from2 saccharomyces cerevisiae. 20 d1ta3a_ 13.8 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 21 c2ctpA_ not modelled 13.4 30 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 12 22 c2bvfA_ not modelled 13.3 10 PDB header:oxidase Chain: A: PDB Molecule:6-hydroxy-d-nicotine oxidase; PDBTitle: crystal structure of 6-hydoxy-d-nicotine oxidase from2 arthrobacter nicotinovorans. crystal form 3 (p1) 23 c2lgwA_ not modelled 12.4 28 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 2; PDBTitle: solution structure of the j domain of hsj1a 24 c3mfbA_ not modelled 12.4 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the s-type pyocin domain of eca16692 protein from erwinia carotovora, northeast structural3 genomics consortium target ewr82c 25 c2l6lA_ not modelled 12.1 15 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 24; PDBTitle: solution structure of human j-protein co-chaperone, dph4 26 c1bq0A_ not modelled 11.9 33 PDB header:chaperone Chain: A: PDB Molecule:dnaj; PDBTitle: j-domain (residues 1-77) of the escherichia coli n-terminal2 fragment (residues 1-104) of the molecular chaperone dnaj,3 nmr, 20 structures 27 d1r53a_ not modelled 11.7 27 Fold:Chorismate synthase, AroC Superfamily:Chorismate synthase, AroC Family:Chorismate synthase, AroC 28 c2an7A_ not modelled 11.4 42 PDB header:dna binding protein Chain: A: PDB Molecule:protein pard; PDBTitle: solution structure of the bacterial antidote pard 29 c2y3rC_ not modelled 11.3 14 PDB header:oxidoreductase Chain: C: PDB Molecule:taml; PDBTitle: structure of the tirandamycin-bound fad-dependent2 tirandamycin oxidase taml in p21 space group 30 c2guzO_ not modelled 10.9 0 PDB header:chaperone, protein transport Chain: O: PDB Molecule:mitochondrial import inner membrane translocase PDBTitle: structure of the tim14-tim16 complex of the mitochondrial2 protein import motor 31 c2yuaA_ not modelled 10.9 40 PDB header:chaperone Chain: A: PDB Molecule:williams-beuren syndrome chromosome region 18 PDBTitle: solution structure of the dnaj domain from human williams-2 beuren syndrome chromosome region 18 protein 32 d1u5tb1 not modelled 10.7 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 33 d1vjha_ not modelled 10.6 17 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 34 d3bz6a1 not modelled 10.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PSPTO2686-like 35 d1gff1_ not modelled 10.6 30 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Microviridae-like VP 36 d1uyra1 not modelled 10.5 23 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 37 c3js8A_ not modelled 10.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:cholesterol oxidase; PDBTitle: solvent-stable cholesterol oxidase 38 c2ntxB_ not modelled 10.3 30 PDB header:signaling protein Chain: B: PDB Molecule:emb cab41934.1; 39 c2ys2A_ not modelled 10.1 50 PDB header:transferase Chain: A: PDB Molecule:cytoplasmic tyrosine-protein kinase bmx; PDBTitle: solution structure of the btk motif of human cytoplasmic2 tyrosine-protein kinase bmx 40 c2dmxA_ not modelled 10.1 29 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 8; PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8 41 c2yxyA_ not modelled 10.0 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical conserved protein, gk0453; PDBTitle: crystarl structure of hypothetical conserved protein, gk0453 42 c2dvkA_ not modelled 9.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0130 protein ape0816; PDBTitle: crystal structure of hypothetical protein from aeropyrum pernix 43 d1w7pd2 not modelled 9.7 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 44 d2i9fa1 not modelled 9.6 18 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Arterivirus nucleocapsid protein 45 c2ctrA_ not modelled 9.4 35 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 9; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 9 46 c2ochA_ not modelled 9.4 28 PDB header:chaperone Chain: A: PDB Molecule:hypothetical protein dnj-12; PDBTitle: j-domain of dnj-12 from caenorhabditis elegans 47 c2hjhB_ not modelled 9.4 14 PDB header:hydrolase Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2; PDBTitle: crystal structure of the sir2 deacetylase 48 d1hdja_ not modelled 9.1 33 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 49 d1ewsa_ not modelled 9.1 63 Fold:Defensin-like Superfamily:Defensin-like Family:Defensin 50 d1uc6a_ not modelled 9.0 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 51 c1gupC_ not modelled 8.8 38 PDB header:nucleotidyltransferase Chain: C: PDB Molecule:galactose-1-phosphate uridylyltransferase; PDBTitle: structure of nucleotidyltransferase complexed with udp-2 galactose 52 c2cugA_ not modelled 8.8 35 PDB header:chaperone Chain: A: PDB Molecule:mkiaa0962 protein; PDBTitle: solution structure of the j domain of the pseudo dnaj2 protein, mouse hypothetical mkiaa0962 53 c1zwjA_ not modelled 8.6 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative galactose-1-phosphate uridyl transferase; PDBTitle: x-ray structure of galt-like protein from arabidopsis thaliana2 at5g18200 54 d1wjza_ not modelled 8.5 15 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 55 c1mbbA_ not modelled 8.2 15 PDB header:oxidoreductase Chain: A: PDB Molecule:uridine diphospho-n-acetylenolpyruvylglucosamine PDBTitle: oxidoreductase 56 c1vexA_ not modelled 7.9 23 PDB header:cell adhesion Chain: A: PDB Molecule:f-spondin; PDBTitle: f-spondin tsr domain 4 57 d1sq1a_ not modelled 7.9 24 Fold:Chorismate synthase, AroC Superfamily:Chorismate synthase, AroC Family:Chorismate synthase, AroC 58 d1sf9a_ not modelled 7.9 26 Fold:SH3-like barrel Superfamily:Hypothetical protein YfhH Family:Hypothetical protein YfhH 59 c1fmhB_ not modelled 7.8 31 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper 60 c2o59B_ not modelled 7.8 14 PDB header:isomerase/dna Chain: B: PDB Molecule:dna topoisomerase 3; PDBTitle: structure of e. coli topoisomerase iii in complex with an 8-2 base single stranded oligonucleotide. frozen in glycerol3 ph 8.0 61 c2dzlA_ not modelled 7.8 75 PDB header:structural genomics unknown function Chain: A: PDB Molecule:protein fam100b; PDBTitle: solution structure of the uba domain in human protein2 fam100b 62 d1qb5d_ not modelled 7.0 33 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 63 c2e6iA_ not modelled 6.9 50 PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase itk/tsk; PDBTitle: solution structure of the btk motif of tyrosine-protein2 kinase itk from human 64 c2qsaA_ not modelled 6.5 10 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog dnj-2; PDBTitle: crystal structure of j-domain of dnaj homolog dnj-2 precursor from2 c.elegans. 65 c1xjvA_ not modelled 6.5 8 PDB header:transcription/dna Chain: A: PDB Molecule:protection of telomeres 1; PDBTitle: crystal structure of human pot1 bound to telomeric single-2 stranded dna (ttagggttag) 66 c2c55A_ not modelled 6.5 21 PDB header:viral protein Chain: A: PDB Molecule:protein p6; PDBTitle: solution structure of the human immunodeficiency virus type2 1 p6 protein 67 c3s88J_ not modelled 6.5 17 PDB header:immune system/viral protein Chain: J: PDB Molecule:envelope glycoprotein; PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6 68 c3pkzK_ not modelled 6.4 17 PDB header:recombination Chain: K: PDB Molecule:recombinase sin; PDBTitle: structural basis for catalytic activation of a serine recombinase 69 d1zsoa1 not modelled 6.2 18 Fold:MAL13P1.257-like Superfamily:MAL13P1.257-like Family:MAL13P1.257-like 70 c3mlhA_ not modelled 6.2 11 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin; PDBTitle: crystal structure of the 2009 h1n1 influenza virus hemagglutinin2 receptor-binding domain 71 c3k7bA_ not modelled 6.1 36 PDB header:viral protein Chain: A: PDB Molecule:protein a33; PDBTitle: the structure of the poxvirus a33 protein reveals a dimer of unique c-2 type lectin-like domains. 72 d2i0ka2 not modelled 5.9 7 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 73 d1vjza_ not modelled 5.8 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 74 c2bjqA_ not modelled 5.8 30 PDB header:motility Chain: A: PDB Molecule:mfp2a; PDBTitle: crystal structure of the nematode sperm cell motility2 protein mfp2 75 d1vyia_ not modelled 5.8 36 Fold:Phosphoprotein M1, C-terminal domain Superfamily:Phosphoprotein M1, C-terminal domain Family:Phosphoprotein M1, C-terminal domain 76 d1ewqa3 not modelled 5.7 45 Fold:Ribonuclease H-like motif Superfamily:DNA repair protein MutS, domain II Family:DNA repair protein MutS, domain II 77 c1junB_ not modelled 5.6 67 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 78 d1cnva_ not modelled 5.6 38 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 79 c3hrdH_ not modelled 5.6 36 PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 80 d1d0qa_ not modelled 5.5 20 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 81 d1ffva1 not modelled 5.5 18 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 82 d2ix0a2 not modelled 5.5 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 83 c2lcyA_ not modelled 5.3 22 PDB header:viral protein Chain: A: PDB Molecule:virion spike glycoprotein; PDBTitle: nmr structure of the complete internal fusion loop from ebolavirus gp22 at ph 5.5 84 c3siiA_ not modelled 5.3 12 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:poly(adp-ribose) glycohydrolase; PDBTitle: the x-ray crystal structure of poly(adp-ribose) glycohydrolase bound2 to the inhibitor adp-hpd from thermomonospora curvata 85 d1uc8a1 not modelled 5.3 13 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Lysine biosynthesis enzyme LysX, N-terminal domain 86 d1e6yb2 not modelled 5.3 25 Fold:Ferredoxin-like Superfamily:Methyl-coenzyme M reductase subunits Family:Methyl-coenzyme M reductase alpha and beta chain N-terminal domain 87 d1nu9c1 not modelled 5.2 19 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Staphylocoagulase Family:Staphylocoagulase 88 c2vfvA_ not modelled 5.1 18 PDB header:oxidoreductase Chain: A: PDB Molecule:xylitol oxidase; PDBTitle: alditol oxidase from streptomyces coelicolor a3(2): complex2 with sulphite 89 c2exrA_ not modelled 5.1 17 PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 7; PDBTitle: x-ray structure of cytokinin oxidase/dehydrogenase (ckx)2 from arabidopsis thaliana at5g21482 90 d1zxoa1 not modelled 5.0 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0