Job Description P39277 Confidence 4.65% Date Thu Jan 5 11:58:47 GMT 2012 Rank 67 Aligned Residues 170 % Identity 13% Template d1iwga7 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

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		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	E	A	F	A	H	L	A	S	E	F	K	N	P	E	R	D	F	P	R	A	L	M	I	G	L	L	L	A	G	L	V	Y	W	G	C	T	V	V	V	L	H	F	D	A	Y	G	E	K	M	A	A	A	A	S	L	P	K	I	V	V	Q	L	F	G	V	G	A	L	W	I	A	C	V	I	G	Y	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	P	V	A	Q	Y	P	T	P	F	V	K	I	S	I	H	E	V	V	K	T	L	V	E	A	I	I	L	V	F	L	V	M	Y	L	F	L	Q	N	F	R	A	T	L	I	P	T	I	A	V	P	V	V	L	L	G	T	F	A	V	L	A	A	F	G	F	S	I	N	T	L	T	M	F	G	M	V	L	A
Template Known Secondary structure		T	S				S	S																													T	T				T	T	T	T	T																			T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.								.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.
Query Sequence		C	F	A	S	L	N	I	Y	I	Q	S	F	A	R	L	V	W	S	Q	A	Q	H	N	P	D	H	Y	L	A	R	L	S	S	R	H	I	P	N	N	A	L	N	A	V	L	G	C	C	V	V	S	T	L	V	I	H	A	L	.	.	.	.	.	.	.	E	I	N	L	D	A	L	I	I	Y	A	N	G	I	F
Query Conservation																																																												.	.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	L	L	V	D	D	A	I	V	V	V	E	N	V	E	R	V	M	A	E	E	G	L	P	P	K	E	A	T	R	K	S	M	G	Q	I	Q	G	A	L	V	G	I	A	M	V	L	S	A	V	F	V	P	M	A	F	F	G	G	S	T	G	A	I	Y	R	Q	F	S	I	T	I	V	S	A	M	A	L	S
Template Known Secondary structure																							T	S			S							G	G	G	T																	T	T	T	T				T	T	S
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	I	Y	L	L	C	M	L	A	G	C	K	L	L	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	V	A	L	I	L	T	P	A	L	C	A	T	M	L	K
Template Known Secondary structure					T	T	T									S
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions