Job Description P39277 Confidence 95.23% Date Thu Jan 5 11:58:47 GMT 2012 Rank 8 Aligned Residues 327 % Identity 11% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																													.									.	.	.	.	.
Query SS confidence																													.									.	.	.	.	.
Query Sequence		N	N	S	L	W	A	W	P	V	L	I	I	L	V	F	P	I	A	I	V	F	A	I	L	G	R	H	.	Y	P	S	A	G	G	V	A	.	.	.	.	.	H	F	V	G	M	A	F	G	S	R	L	E	R	V	T	G	W	L	F	L	S	V	I	P	V	G	L	P	A	A	L	Q	I	A	A	G	F	G	Q
Query Conservation																													.									.	.	.	.	.
Alig confidence																													.									.	.	.	.	.
Template Conservation
Template Sequence		H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q
Template Known Secondary structure			T	S																				T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.							.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.																.	.	.	.	.	.	170	.
Predicted Secondary structure																											.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	F	G	W	H	S	W	Q	L	L	L	A	E	L	G	T	L	A	L	V	W	Y	I	G	.	.	.	.	.	.	T	R	G	A	S	S	S	A	N	L	Q	T	V	I	A	G	L	I	V	A	L	I	V	A	I	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	A	G	D	I	K	P	A
Query Conservation																											.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M
Template Known Secondary structure		T	S	T	T				T																				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240										.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.
Query Sequence		N	I	P	F	P	A	P	G	N	I	E	L	T	G	L	F	A	A	L	S	V	M	F	W	C	F	V	G	L	E	A	F	A	H	L	A	S	E	F	K	N	P	E	R	D	F	P	R	A	L	M	I	G	L	L	L	A	G	L	V	Y	W	G	C	T	V	V	V	L	.	.	.	.	.	.	.	.	.	H	F
Query Conservation																																																																							.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.																											.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.
Template Sequence		L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	.	.	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I
Template Known Secondary structure			T					S	S								T											T											T		S	S	.	.																																			T	T	S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	Y	G	E	K	M	A	A	A	A	S	L	P	K	I	V	V	Q	L	F	G	V	G	A	L	W	I	A	C	V	I	G	Y	L	A	C	F	A	S	L	N	I	Y	I	Q	S	F	A	R	L	V	W	S	Q	A	Q	H	N	P	D	H	Y	L	A	R	L	S	S	R	H	I	P	N	N	A	L	N	A	V
Query Conservation
Alig confidence																																																														.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	.	.	.	.	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I
Template Known Secondary structure									G	G	G												T	S	S	S	T	T																												T	T	S		S	S	.	.	.	.	S	S	S		S	S		S	T	T
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.					.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	C	C	V	V	S	T	L	V	I	H	A	L	E	I	N	L	D	A	L	I	I	Y	A	N	G	I	F	I	M	I	Y	L	L	C	M	L	A	G	C	K	L	L	Q	G	R	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	G	I	I	G	I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K
Template Known Secondary structure															S	S																																T
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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