Job Description P0A7L0 Confidence 100.00% Date Thu Jan 5 11:05:50 GMT 2012 Rank 10 Aligned Residues 208 % Identity 22% Template c3iz5A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein l1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	V	D	A	T	K	Q	Y	D	I	N	E	A	I	A	L	L	K	E	L	A	T	A	K	F	V	E	S	V	D	V	A	V	N	L	G	I	D	A	R	K	S	D	Q	N	V	R	G	A	T	V	L	P	H	G	T	G	R	S	V	R	V	A	V	F	T	Q	G	A	N	A	E	A	A	K	A	A	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	L	Q	S	D	A	V	K	D	A	I	T	Q	I	V	G	E	A	R	E	K	K	R	K	F	T	E	T	V	E	L	Q	I	G	L	K	N	Y	D	P	Q	K	D	K	R	F	S	G	S	V	K	L	P	H	I	P	R	P	K	M	R	V	C	M	L	G	D	A	Q	H	V	D	Q	A	E	K	M	G	L
Template Known Secondary structure		T	G	G	G	S		S	S					T	T	T	S	S	S	S	T	T								S	S														S	S	S	T	T							B		S	S														T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		93	.	.	.	.	.	.	100	.	.	.	.	.							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																						.
Query SS confidence															.	.	.	.	.	.																						.
Query Sequence		E	L	V	G	M	E	D	L	A	D	Q	I	K	.	.	.	.	.	.	K	G	E	M	N	F	D	V	V	I	A	S	P	D	A	M	R	V	V	G	Q	.	L	G	Q	V	L	G	P	R	G	L	M	P	N	P	K	V	G	T	V	T	P	N	V	A	E	A	V	K	N	A	K	A	G	Q	V	R	Y	R	N
Query Conservation															.	.	.	.	.	.																						.
Alig confidence															.	.	.	.	.	.																						.																			.	.													.
Template Conservation																																																													.	.													.
Template Sequence		D	Y	M	D	V	E	S	L	K	K	M	N	K	N	K	K	L	V	K	K	L	A	K	K	Y	H	A	F	L	A	S	E	A	I	I	K	Q	I	P	R	L	L	G	P	G	L	N	K	A	G	K	F	P	T	L	V	S	H	Q	.	.	E	S	L	E	A	K	V	N	E	T	K	A	.	T	V	K	F	Q	L
Template Known Secondary structure		T		S					G	G	G							T					S						T	T	T													T	T	T		S			T	T	T	T		B		S			.	.										T	B		.						T
Template Predicted Secondary structure																																																													.	.													.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	N	G	I	I	H	T	T	I	G	K	V	D	F	D	A	D	K	L	K	E	N	L	E	A	L	L	V	A	L	K	K	A	K	P	T	Q	A	K	G	V	Y	I	K	K	V	S	I	S	T	T	M	G	A	G	V	A	V	D
Query Conservation
Alig confidence																																									.	.
Template Conservation																																									.	.
Template Sequence		K	K	V	L	C	M	G	V	A	V	G	N	L	S	M	D	E	K	Q	I	Q	Q	N	I	Q	M	S	V	N	F	L	V	S	L	L	K	K	N	W	.	.	Q	N	V	R	C	L	Y	V	K	S	T	M	G	K	R	V	R	V	F
Template Known Secondary structure		T	S									T	T	S																						S	S			S	.	.		S		S							S	S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions