Job Description P0A7L0 Confidence 100.00% Date Thu Jan 5 11:05:50 GMT 2012 Rank 3 Aligned Residues 226 % Identity 45% Template c3bboD_ PDB info PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein l1; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Resolution 9.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	T	K	R	M	R	V	I	R	E	K	V	D	A	T	K	Q	Y	D	I	N	E	A	I	A	L	L	K	E	L	A	T	A	K	F	V	E	S	V	D	V	A	V	N	L	G	I	D	A	R	K	S	D	Q	N	V	R	G	A	T	V	L	P	H	G	T	G	R	S	V	R	V	A	V	F	T	Q	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	S	K	R	F	L	E	I	Q	K	L	R	E	I	K	Q	E	Y	D	L	K	T	A	L	S	L	M	K	Q	M	S	S	T	K	F	V	E	T	A	E	A	H	F	R	L	N	I	D	P	K	Y	N	D	Q	Q	L	R	A	T	V	S	L	P	K	G	T	G	K	T	V	K	I	A	V	L	A	Q	G	D
Template Known Secondary structure						S	S	T	T	T	T	T	S			S	S	S				T	T	T	T					S	T	T			S	S	S												S		T	T	S	S	T	T									T	T	T	S	S	S	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	E	A	A	K	A	A	G	A	E	L	V	G	M	E	D	L	A	D	Q	I	K	K	G	E	M	N	F	D	V	V	I	A	S	P	D	A	M	R	V	V	G	Q	L	G	Q	V	L	G	P	R	G	L	M	P	N	P	K	V	G	T	V	T	P	N	V	A	E	A	V	K	N	A	K	A	G	Q	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	D	E	A	K	A	A	G	A	D	I	V	G	G	E	E	L	I	E	Q	I	K	G	G	F	M	D	F	D	K	L	I	A	T	S	D	M	M	A	K	V	A	S	L	G	R	I	L	G	P	R	G	L	M	P	T	P	K	A	G	T	V	T	P	N	V	A	Q	A	V	E	E	F	K	K	G	K	V	E
Template Known Secondary structure		T	T					T	T	T		S					T	T	T					T	T	T					S						S	S	S					G	G	G	G	G	T	T	T	T	T	T		S			T	T	T	T		B	S	S							T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	N	D	K	N	G	I	I	H	T	T	I	G	K	V	D	F	D	A	D	K	L	K	E	N	L	E	A	L	L	V	A	L	K	K	A	K	P	T	Q	A	K	G	V	Y	I	K	K	V	S	I	S	T	T	M	G	A	G	V	A	V	D	Q	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	V	D	K	T	G	I	V	H	I	P	F	G	K	L	N	F	E	E	E	D	L	L	I	N	L	F	A	T	I	K	S	V	E	T	N	K	P	T	G	A	K	G	V	Y	W	K	S	A	H	I	S	S	S	M	G	P	S	I	R	L	N	I	R	E
Template Known Secondary structure						S	S										T	T	S																		T	T			T	T			S		S								B	S	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions